PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_00834 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 188aa MW: 21148.2 Da PI: 10.3833 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.2 | 3.9e-34 | 33 | 90 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCtsa C vkk+vers++dp+vv++tYeg+H+h+ PEQU_00834 33 EDGYRWRKYGQKAVKNSPFPRSYYRCTSALCGVKKRVERSSNDPTVVVTTYEGQHTHP 90 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-35 | 17 | 92 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-29 | 24 | 92 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.973 | 27 | 92 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-40 | 32 | 91 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-27 | 33 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MGSESKGRKK KGQKRKREPR FAFLTQSEVD HLEDGYRWRK YGQKAVKNSP FPRSYYRCTS 60 ALCGVKKRVE RSSNDPTVVV TTYEGQHTHP SPIISRGTHH FPASSPELVD LHRFQLQSSY 120 LLSSQPLNLR PVITGAPAPL APPQRPISVA GFGERSYCDA AIGIGLRDHG LLQDLIPSEV 180 MMKRELLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-29 | 25 | 92 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-29 | 25 | 92 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020591195.1 | 1e-137 | probable WRKY transcription factor 71 | ||||
Swissprot | Q9FGZ4 | 9e-47 | WRK48_ARATH; Probable WRKY transcription factor 48 | ||||
TrEMBL | A0A2R4LUZ6 | 1e-108 | A0A2R4LUZ6_CYMEN; Putative WRKY transcription factor 12 | ||||
STRING | XP_008781154.1 | 4e-59 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 7e-46 | WRKY DNA-binding protein 48 |
Publications ? help Back to Top | |||
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