PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_00455 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 184aa MW: 21468.9 Da PI: 10.0356 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.8e-17 | 17 | 77 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa+a++ a++k++g+ PEQU_00455 17 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDEEEAAARAYDLAALKYWGH 77 78*******************999955656446*************************997 PP | |||||||
2 | AP2 | 54.2 | 3.6e-17 | 119 | 170 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a+++a+ +++g PEQU_00455 119 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDKAAIEYRG 170 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.0E-14 | 17 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-18 | 17 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.323 | 18 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-27 | 18 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-17 | 18 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 19 | 30 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-12 | 119 | 170 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.70E-22 | 119 | 180 | No hit | No description |
SuperFamily | SSF54171 | 4.64E-18 | 119 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.9E-25 | 120 | 184 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 120 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.938 | 120 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-6 | 160 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
RKSRKSVPRD FPSQRSSVYR GVTRHRWTGR YEAHLWDKNC WNESQNKKGR QVYLGAYDEE 60 EAAARAYDLA ALKYWGHDTT LNFPLSNYEE EVKDMDGLSK EEYIGTLRRK SSGFSRGVSK 120 YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDKAAIEYRG LNAVTNFKLS 180 HYIK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020595243.1 | 1e-135 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 5e-98 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2K2B973 | 1e-117 | A0A2K2B973_POPTR; Uncharacterized protein | ||||
STRING | XP_004507769.1 | 1e-116 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 8e-95 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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