PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00368
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 324aa    MW: 36864.3 Da    PI: 6.6753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00368genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-1767112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+d+v+q+G+ +W++Ia+++  gR++k+c++rw++ 
       PEQU_00368  67 RGHWRPAEDARLKDLVAQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 112
                      899*****************************.***********996 PP
2Myb_DNA-binding54.42.9e-17119162146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++++eE+++l+ a++++G++ W++I+r ++ gRt++ +k++w+ 
       PEQU_00368 119 KKAFSEEEEDRLLSAHRLYGNK-WALISRLFP-GRTDNAVKNHWHV 162
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6162113IPR017930Myb domain
SuperFamilySSF466895.24E-2866160IPR009057Homeodomain-like
SMARTSM007175.7E-1466115IPR001005SANT/Myb domain
PfamPF002495.1E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2668120IPR009057Homeodomain-like
CDDcd001671.51E-1270111No hitNo description
PROSITE profilePS5129425.367114168IPR017930Myb domain
SMARTSM007175.8E-15118166IPR001005SANT/Myb domain
PfamPF002494.5E-15119161IPR001005SANT/Myb domain
CDDcd001675.35E-11121161No hitNo description
Gene3DG3DSA:1.10.10.605.5E-20121166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEFSSSLFAS LFPTVEREGR RSDAVLTLEE HRMMESSDFE GLSEKNCRIE EHEGIELESG  60
NSKHCARGHW RPAEDARLKD LVAQYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINKK  120
AFSEEEEDRL LSAHRLYGNK WALISRLFPG RTDNAVKNHW HVIMARRQRE QSNAYRRRKP  180
CTSSKFDKRM EVKYSNNACS AESTISSNGF DNLCISRGFP GHGFLTRYSL PQPAPRFEYL  240
IDGKLAEGRN GCYERIFDPT VELRQASPLI PVPGIHHSGL SDSISEASAT DSVINNAFIS  300
EEAEELETEK ISFPFIDFLG VGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C6e-32671674104C-Myb DNA-Binding Domain
1msf_C6e-32671674104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598432.10.0transcription factor MYB56-like
RefseqXP_020599341.10.0transcription factor MYB56-like
TrEMBLA0A2I0X6L11e-174A0A2I0X6L1_9ASPA; Transcription factor MYB44
STRINGXP_008797327.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-71myb domain protein 105