PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00200
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 472aa    MW: 52527.4 Da    PI: 8.6574
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00200genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-40174250278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 CqvegC++dl++ak+yhr+h+vCe+hsk+p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  PEQU_00200 174 CQVEGCSTDLTSAKDYHRKHRVCEKHSKSPRVIVAGQERRFCQQCSRFHDLSEFDQKKRSCRRRLSDHNARRRKAQP 250
                 **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-32167235IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.146171248IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.16E-38172253IPR004333Transcription factor, SBP-box
PfamPF031104.3E-31174247IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEWNFKNSLQ WDWENFGLFS GKESEISKST EQSEWKAEGG SISNGSLYSC GSGTCSGSEL  60
GNGSSKKSVP TSISFLSKTG NKTSEGTLEA LQVTLNNQIK SNQMAQGEDR RTSPVIVGCV  120
SSGEPPIGLK LGKRTYFENL GSANIKNSSV SLTPPAASMK RSRASHQAIQ HTYCQVEGCS  180
TDLTSAKDYH RKHRVCEKHS KSPRVIVAGQ ERRFCQQCSR FHDLSEFDQK KRSCRRRLSD  240
HNARRRKAQP ETISFNPSRL PPSFYDERQQ MNFFLNLAPF SHVKPSTSTL LDQSNGFSLS  300
IRKGSWLKTT KAGVEGQLNL PVMDFSNTNT ASRDEFNRFM PFKCTASEVL NQDQEAYVHT  360
SNLNGAPELR RALSLLSSDA WCPSSTAQTN MNQLANADPI VTSHLRAQLA NSAPQCWQDD  420
NSLPEQTLPF NLHGNGTHLQ DLQLSKAPYE TSFYEATQVF SKSDGHFLEF KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271742471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229246KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020599969.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020599970.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020599971.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020599972.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020599973.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020599975.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020599976.10.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_020599977.10.0squamosa promoter-binding-like protein 12 isoform X1
TrEMBLA0A2H4H2930.0A0A2H4H293_9ASPA; Squamosa promoter-binding-like protein 7 (Fragment)
TrEMBLA0A2I0VKK50.0A0A2I0VKK5_9ASPA; Squamosa promoter-binding-like protein 12
STRINGXP_008809089.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-57squamosa promoter binding protein-like 2