PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s999072g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 65aa    MW: 7349.53 Da    PI: 9.4742
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s999072g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-081445131
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartm 31
                       +g+W++eEd +l++ +++ G+g +W + +++ 
  PDK_30s999072g001 14 KGPWSPEEDSKLKEFIEKNGTGgNWIALPHKA 45
                       79********************9997777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-10544IPR009057Homeodomain-like
PROSITE profilePS500907.12948IPR017877Myb-like domain
SuperFamilySSF466898.22E-71148IPR009057Homeodomain-like
PfamPF002491.2E-61444IPR001005SANT/Myb domain
CDDcd001670.001321648No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KNGTGGNWIA LPHKAEHRKW VLMISFKCHM  60
GGRPD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491666.13e-25transcription factor RAX2
RefseqXP_024038144.13e-25transcription factor RAX2
SwissprotQ9SJL78e-24RAX2_ARATH; Transcription factor RAX2
TrEMBLV4SS013e-24V4SS01_9ROSI; Uncharacterized protein
STRINGXP_006428450.15e-25(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-26MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]