PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s996781g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LSD | ||||||||
Protein Properties | Length: 143aa MW: 14863.3 Da PI: 7.7401 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.7 | 9.2e-14 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+s++Ca+C++V PDK_30s996781g003 27 CSGCRNLLLYPLGATSICCAICNAV 51 ************************9 PP | |||||||
2 | zf-LSD1 | 46.6 | 5.7e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ PDK_30s996781g003 66 CGGCHTLLMYIRGATSVQCSCCHTI 90 ***********************97 PP | |||||||
3 | zf-LSD1 | 40.1 | 5.9e-13 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA sV+Ca+C++V PDK_30s996781g003 104 CGNCQMLLMYQYGAGSVKCAVCNFV 128 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-12 | 24 | 52 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 9.07E-5 | 27 | 125 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 4.6E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.5E-14 | 64 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.5E-13 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 6.1E-10 | 101 | 131 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.9E-12 | 104 | 128 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MPVPLAPYPN SSVPFTPPNG GQNQLVCSGC RNLLLYPLGA TSICCAICNA VTAAPPPGTE 60 MARLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCQML LMYQYGAGSV 120 KCAVCNFVTS VGASPSTEHK PNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008799374.1 | 5e-99 | protein LSD1 isoform X1 | ||||
Refseq | XP_008799375.1 | 5e-99 | protein LSD1 isoform X1 | ||||
Refseq | XP_008799376.1 | 5e-99 | protein LSD1 isoform X1 | ||||
Refseq | XP_026663066.1 | 5e-99 | protein LSD1 isoform X1 | ||||
Swissprot | Q0J7V9 | 1e-77 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A2H3YIT7 | 1e-97 | A0A2H3YIT7_PHODC; protein LSD1 isoform X1 | ||||
STRING | ERN09291 | 5e-86 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 7e-77 | lsd one like 1 |
Publications ? help Back to Top | |||
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