PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s993871g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 22343.3 Da PI: 7.3482 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.5e-09 | 91 | 133 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r RR+ri +++ Lr+l+P +K++ a++L +A++Y+k L PDK_30s993871g006 91 IAARHRRERIGERIRILRQLVPGG-----TKMDTASMLDEAIHYVKFL 133 56799*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.85 | 84 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-14 | 90 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-15 | 90 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-13 | 91 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-6 | 92 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-7 | 107 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGNYLLFDHA PFELVQPIDQ LQAHVPSPSF PSDQMEIQRQ AGGGEYEEER LGAMKEMMYK 60 IAAMQPVDID PSTIKKPRRR NVWISDDPQS IAARHRRERI GERIRILRQL VPGGTKMDTA 120 SMLDEAIHYV KFLKRQVQEL QSPHMAQVFT GHPASSMGWP VRPDPHASSS SSSSSMGAPP 180 GLGFGFDGTA DHQIHGGCRG N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026663014.1 | 1e-149 | transcription factor HEC3-like | ||||
TrEMBL | A0A3Q0I8A1 | 1e-147 | A0A3Q0I8A1_PHODC; transcription factor HEC3-like | ||||
STRING | XP_008799041.1 | 1e-148 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9051 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09750.1 | 4e-36 | bHLH family protein |