PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s988291g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 298aa    MW: 31146.6 Da    PI: 9.7648
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s988291g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.5e-09102127227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+lC+ +     Ck+G++C+FaHg+
  PDK_30s988291g003 102 KTRLCNKYNTAEGCKFGEKCHFAHGE 127
                        8***********************96 PP
2zf-CCCH37.34.5e-12265289126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ykt+lC +fa+ G C +G+rC+FaHg
  PDK_30s988291g003 265 YKTKLCENFAK-GSCTFGERCHFAHG 289
                        9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-63561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.84259No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-1496132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-8100131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038100127IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.75E-15166243IPR004088K Homology domain, type 1
SMARTSM003224.2E-11170240IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.7E-15171239IPR004088K Homology domain, type 1
PROSITE profilePS5008414.194171235IPR004088K Homology domain, type 1
CDDcd001056.14E-14173235No hitNo description
PfamPF000134.1E-11173237IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.4E-16263295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9264294IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.915264291IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9265289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
METARKRGRP EVSNGGAAGP KRLRETESFQ HGLGSKSKPC TKFFSTSGCP FGEGCHFLHY  60
VPGGIQAVAQ MTNLGNPAVP PPARNPMVPP AFSDGPPGPA VKTRLCNKYN TAEGCKFGEK  120
CHFAHGEREL GKPIVPSQDG PIAPPTGGRL ASRLEPPPPV GLPAAASFGA SATAKISVDA  180
SLAGAIIGKG GVNTKQICRI TGVRLAIRDH ETDPNLRNIE LEGTFDQIKN ASAMVRELIV  240
NISSTTSLPV KNPAVVAIGG SGNNYKTKLC ENFAKGSCTF GERCHFAHGA SELRKAAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805470.10.0zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R01e-134C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2H3YXX60.0A0A2H3YXX6_PHODC; zinc finger CCCH domain-containing protein 31-like
STRINGXP_008805470.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-77C3H family protein