PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s987991g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 322aa    MW: 36284.7 Da    PI: 9.8755
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s987991g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.2e-41230307178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC++ l +ak+yh+rhkvCe+hskap+v+v g eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  PDK_30s987991g004 230 RCQVEGCNKALGDAKDYHKRHKVCEMHSKAPKVVVLGAEQRFCQQCSRFHVISEFDDAKRSCRRRLAGHNERRRKSTN 307
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-35225292IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.265228305IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-39229310IPR004333Transcription factor, SBP-box
PfamPF031105.5E-32231304IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MASSNDSGSI ELPQQSRFQF ECDPLLGHKQ VANLEYLSTL GINQGGPALK EMDQELPAHV  60
IISSLHVKLD RHHAASIRGV VEILHELLSN EDVVHDASAT DECLFLWTIL GRKEKKAAYF  120
PTFHWGSLIN RVRRKEFGYC LSFKPARALR RGLRCLSRDP THLQPFLPPL LASRGSRLPV  180
CPLFRKESHH HHHLTCLKLG KRQYYGEEGV AGGGIKRERL SSNPAAGVPR CQVEGCNKAL  240
GDAKDYHKRH KVCEMHSKAP KVVVLGAEQR FCQQCSRFHV ISEFDDAKRS CRRRLAGHNE  300
RRRKSTNDSI KNSSLVQVLV LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30222304284squamosa promoter binding protein-like 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.14e-38squamosa promoter binding protein-like 3