PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s984861g008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 351aa MW: 40223.8 Da PI: 7.098 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4e-32 | 55 | 108 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ PDK_30s984861g008 55 PRLRWTPDLHLCFVRAVERLGGQDRATPKLVLQLMNVKGLSISHVKSHLQMYRS 108 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-30 | 51 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.953 | 51 | 111 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-15 | 53 | 109 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.6E-24 | 54 | 110 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-9 | 56 | 107 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MAKNLSEKST DKEEDEEDCD ENARNGRSSS NSTTDESKKK LNSGFVRQYI RSNNPRLRWT 60 PDLHLCFVRA VERLGGQDRA TPKLVLQLMN VKGLSISHVK SHLQMYRSKK IDESDRDDSR 120 NTIEGRARHA YILSHLPALQ GFPQRPQTFS SREFRSTMDL GSHSSAAEMI FKGHHRMMDI 180 RDIHMGSLTP NDPASGELHG TFEDFHLLYD HKIERPQFRP RGMEPCFISQ WHERGIEQAT 240 RFSNTCTQEI EQQRTTSSLS LGGCFAMRWK DDDHEPDLDL SLNVTPRYEK RKRYWENEEV 300 DSSLSLSLIS PSSKLEGCSR DVEKASKHIS LKEKDGSGEH ARGTSTLDLT I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 56 | 110 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00301 | DAP | Transfer from AT2G40260 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008794301.1 | 0.0 | uncharacterized protein LOC103710387 | ||||
TrEMBL | A0A2H3Y6S5 | 0.0 | A0A2H3Y6S5_PHODC; uncharacterized protein LOC103710387 | ||||
STRING | XP_008794301.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40260.1 | 2e-44 | G2-like family protein |