PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s983711g008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 22375.6 Da PI: 10.2675 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.5 | 1.1e-20 | 17 | 61 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krien+ r+vtfskR+ ++KKA EL +LC+ae+a+++fs+ g+ PDK_30s983711g008 17 KRIENEDARYVTFSKRKLSLFKKAAELATLCGAEIALVVFSPAGR 61 79****************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-27 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.207 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-23 | 10 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-23 | 18 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MATKPRKTRG RQKVELKRIE NEDARYVTFS KRKLSLFKKA AELATLCGAE IALVVFSPAG 60 RPYSLGLPTI DEVFRRVLSS GPAQVGSGMA GHSVVNPSAE QCSEVAKHLE QERSRKAVLA 120 KRLQMAAPPR WEGGLDGLGW DELLAQVKEV QELKSKVDSR VGEVLLQGSS SSTNPIATVD 180 AWPVGGSAAH PQYRPGGFVR FDHGGW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790450.1 | 1e-149 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A2H3XYH5 | 1e-148 | A0A2H3XYH5_PHODC; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_008790450.1 | 1e-149 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 7e-25 | M-type_MADS family protein |