PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s983711g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 266aa    MW: 28645.9 Da    PI: 9.629
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s983711g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.4e-213886149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       krie++  rqvtfskRr g++KKA+E+ +LC+a+v ++++s+ g+ y +
  PDK_30s983711g006 38 KRIEEEQTRQVTFSKRRSGLFKKASEIGTLCGAQVGILVYSPGGRPYSF 86
                       79*****************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-313089IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.963090IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-2631105IPR002100Transcription factor, MADS-box
CDDcd002659.42E-3531101No hitNo description
PRINTSPR004046.4E-203252IPR002100Transcription factor, MADS-box
PfamPF003198.1E-243986IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-205267IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-206788IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSLNRPSSPL PIDPKLSLLF VCIMPGRTGH GRRKIEIKRI EEEQTRQVTF SKRRSGLFKK  60
ASEIGTLCGA QVGILVYSPG GRPYSFGHPG FMEVSDRFLP CVPTPTRPAP PPANVLAPQL  120
SKHYLDIVKG LEAAQAKGAV LKERFGVVPE LKARAYESDP EGLRLDELQD VVKRLESLQL  180
RVYSRVSTIL NHEASASRAA LAVQPLNMIN PYATNEPHAH PGGGFMGNNG LAPGGFMGSN  240
GFMGNDGHAP AGFMGNDGHA PAGFIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008790448.10.0agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XXZ80.0A0A2H3XXZ8_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008790448.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3755123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-27AGAMOUS-like 29