PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s982331g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YB | ||||||||
Protein Properties | Length: 171aa MW: 19481.1 Da PI: 8.3984 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 143 | 7.2e-45 | 32 | 126 | 2 | 96 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eq ++lPianv+rimk++lP++akisk aket+qec+sefisfvt+easd+c++++rkti+gdd++ a+ tlG+++ ++++k yl +yre PDK_30s982331g001 32 SEQSHLLPIANVGRIMKQALPQHAKISKRAKETIQECASEFISFVTEEASDRCRKDDRKTIDGDDICCAMKTLGLDEDADAMKRYLCRYRER 123 6999***************************************************************************************9 PP NF-YB 94 ege 96 e++ PDK_30s982331g001 124 EEK 126 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.2E-41 | 31 | 133 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.88E-31 | 35 | 133 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-24 | 38 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.0E-11 | 65 | 83 | No hit | No description |
PRINTS | PR00615 | 4.0E-11 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 4.0E-11 | 103 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDSSIDGQPY FRVHNCSVPR ATASTASYGC TSEQSHLLPI ANVGRIMKQA LPQHAKISKR 60 AKETIQECAS EFISFVTEEA SDRCRKDDRK TIDGDDICCA MKTLGLDEDA DAMKRYLCRY 120 REREEKTASM KCNKPVQIDV RNELPIFRSS QRRDQLPSKS PHNVAETRKF F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 8e-35 | 33 | 122 | 3 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 8e-35 | 33 | 122 | 3 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008813182.1 | 1e-125 | nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | O82248 | 1e-38 | NFYB5_ARATH; Nuclear transcription factor Y subunit B-5 | ||||
TrEMBL | A0A2H3ZGK7 | 1e-123 | A0A2H3ZGK7_PHODC; nuclear transcription factor Y subunit B-4-like | ||||
STRING | XP_008813182.1 | 1e-124 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 5e-41 | nuclear factor Y, subunit B5 |
Publications ? help Back to Top | |||
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