PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s982331g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NF-YB
Protein Properties Length: 171aa    MW: 19481.1 Da    PI: 8.3984
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s982331g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1437.2e-4532126296
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        +eq ++lPianv+rimk++lP++akisk aket+qec+sefisfvt+easd+c++++rkti+gdd++ a+ tlG+++ ++++k yl +yre 
  PDK_30s982331g001  32 SEQSHLLPIANVGRIMKQALPQHAKISKRAKETIQECASEFISFVTEEASDRCRKDDRKTIDGDDICCAMKTLGLDEDADAMKRYLCRYRER 123
                        6999***************************************************************************************9 PP

              NF-YB  94 ege 96 
                        e++
  PDK_30s982331g001 124 EEK 126
                        876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-4131133IPR009072Histone-fold
SuperFamilySSF471133.88E-3135133IPR009072Histone-fold
PfamPF008081.3E-2438101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.0E-116583No hitNo description
PRINTSPR006154.0E-1184102No hitNo description
PRINTSPR006154.0E-11103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDSSIDGQPY FRVHNCSVPR ATASTASYGC TSEQSHLLPI ANVGRIMKQA LPQHAKISKR  60
AKETIQECAS EFISFVTEEA SDRCRKDDRK TIDGDDICCA MKTLGLDEDA DAMKRYLCRY  120
REREEKTASM KCNKPVQIDV RNELPIFRSS QRRDQLPSKS PHNVAETRKF F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-3533122392Transcription factor HapC (Eurofung)
4g92_B8e-3533122392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813182.11e-125nuclear transcription factor Y subunit B-4-like
SwissprotO822481e-38NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2H3ZGK71e-123A0A2H3ZGK7_PHODC; nuclear transcription factor Y subunit B-4-like
STRINGXP_008813182.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-41nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]