PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s979751g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

TALE

Protein Properties

Length: 607aa MW: 68077.9 Da PI: 6.7397

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s979751g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.8	9e-09	372	409	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV +WF N R + PDK_30s979751g002 372 FEHflHPYPSDVDKHILARQTGLSRSQVNNWFINARVR 409 554459******************************88 PP
2	BELL	108.8	3.2e-35	235	304	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 elqk+ka Lls+leeVd+rYk+y+eq++tv+ sFeavag g+a +Y +lA+ka+S+hFrcL+d i++qi PDK_30s979751g002 235 IELQKRKAELLSMLEEVDRRYKKYCEQMRTVVLSFEAVAGEGAAMVYSTLASKAMSKHFRCLRDGIVGQI 304 69******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.0E-57	172	302	IPR006563	POX domain
Pfam	PF07526	2.1E-45	178	300	IPR006563	POX domain
PROSITE profile	PS50071	12.228	350	413	IPR001356	Homeobox domain
CDD	cd00086	2.98E-11	353	414	No hit	No description
SMART	SM00389	1.2E-8	353	417	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.21E-17	354	419	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.1E-28	356	419	IPR009057	Homeodomain-like
Pfam	PF05920	5.7E-18	370	409	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MAHHHPEKLG TMISPAFSYD DFSSTRNSMI QSFEPNQELY SLQAGMEMLG RGFFPKVGSS 60 SSSIGGELSQ SPNENLMVTA ETAATSTMLN LWQRSNRMLG EDNSLRCLLP TEGNQQPNQG 120 LSLSLCNPEP SEAIAGMEQP FRQQHLSANS RDELFPKSTY VLEDRRLFPQ SYQQVQQLKH 180 SKYLIPAQEL LNEFCSLGRG SSSSKHKSHK TNQWEEGGSS SNSSWNQSLC SLDIIELQKR 240 KAELLSMLEE VDRRYKKYCE QMRTVVLSFE AVAGEGAAMV YSTLASKAMS KHFRCLRDGI 300 VGQIQETKKA MGDKDPVAPG TTRGETPRLK LLDQCLRQQK AFQQPGLMES HPWRPQRGLP 360 ERSVSILRSW LFEHFLHPYP SDVDKHILAR QTGLSRSQVN NWFINARVRL WKPMVEEMYL 420 EETKEQDKQT SNGENSNDNN ARTGELQSNR NPNPNSSSLQ SHAEDQKPTP GQLLNDSDSL 480 SSIINSSHHR ADARDPTSSK FPYHDARRHH PVPRAENFGA VDLDFTSYGE CSNHNFGGGV 540 SLTLGLQQHS GRGMSLSFSP ASQHPLLFSG EQMEDCQPSQ FSIIDGEAQN LPYRNLMGAQ 600 MLHDLAG

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MAHHHPEKLG TMISPAFSYD DFSSTRNSMI QSFEPNQELY SLQAGMEMLG RGFFPKVGSS  60
SSSIGGELSQ SPNENLMVTA ETAATSTMLN LWQRSNRMLG EDNSLRCLLP TEGNQQPNQG  120
LSLSLCNPEP SEAIAGMEQP FRQQHLSANS RDELFPKSTY VLEDRRLFPQ SYQQVQQLKH  180
SKYLIPAQEL LNEFCSLGRG SSSSKHKSHK TNQWEEGGSS SNSSWNQSLC SLDIIELQKR  240
KAELLSMLEE VDRRYKKYCE QMRTVVLSFE AVAGEGAAMV YSTLASKAMS KHFRCLRDGI  300
VGQIQETKKA MGDKDPVAPG TTRGETPRLK LLDQCLRQQK AFQQPGLMES HPWRPQRGLP  360
ERSVSILRSW LFEHFLHPYP SDVDKHILAR QTGLSRSQVN NWFINARVRL WKPMVEEMYL  420
EETKEQDKQT SNGENSNDNN ARTGELQSNR NPNPNSSSLQ SHAEDQKPTP GQLLNDSDSL  480
SSIINSSHHR ADARDPTSSK FPYHDARRHH PVPRAENFGA VDLDFTSYGE CSNHNFGGGV  540
SLTLGLQQHS GRGMSLSFSP ASQHPLLFSG EQMEDCQPSQ FSIIDGEAQN LPYRNLMGAQ  600
MLHDLAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	359	417	5	63	Homeobox protein Meis2
3k2a_B	6e-16	359	417	5	63	Homeobox protein Meis2
4xrm_A	7e-16	359	417	5	63	Homeobox protein Meis2
4xrm_B	7e-16	359	417	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008807227.1	0.0	homeobox protein BEL1 homolog
Refseq	XP_008807228.1	0.0	homeobox protein BEL1 homolog
Swissprot	Q38897	1e-119	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A2H3Z1T2	0.0	A0A2H3Z1T2_PHODC; homeobox protein BEL1 homolog
STRING	XP_008807227.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3814	37	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-112	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]