PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s979351g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 754aa MW: 84511.3 Da PI: 6.7858

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s979351g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1.1e-07	197	219	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G+C GdrC+F+Hgp PDK_30s979351g002 197 VPCYYFQK-GHCLKGDRCPFMHGP 219 79****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.441	129	155	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.1	131	154	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.258	193	220	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-6	193	218	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.0E-6	194	219	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	197	219	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-5	198	220	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MGGCSGLACY MKGLMEFKLS LTKGIQACIW DGAELERASY QVEAISYLFF QVYRAEALRS 60 VMAHFFVELR TNKALSPSRS QATHEQWFVC SLRDRIGFGL DFYPGARPTL GNIAPRGTEC 120 EYRHSEGARV NPRDCWYWLN GNCLNPKCTF RHPPLDGLLG MLGTTSELAP PPSQTVALTH 180 VPAAHGPAGF NLNKQNVPCY YFQKGHCLKG DRCPFMHGPQ QRDNPVPQQY SSPPDAVSPL 240 KKESWCLKER TSQQSISKSD FDKPIEVPLA PVKPAGKSEN VLNNGFAIKE TASPYPSEDG 300 LPMFQQSNVP VGSGIALGWP RSRQSQPIDD YLQNAREADE FLRESSPGFD VLVNNMEDSE 360 YFCDEGDFER VPVQDARNLN HVSDFDYHHS DYESVPSLER DQDNGVGVHD RHGRLDNHYG 420 REQQRTSSER ILERASMHEK RMLQGQESSH DIDGSDLRHR LLKQRKLNGS KSIFSPDHCG 480 KLYQRHNYFV DKERYRAHHA CRGPRLFPME SSVSSRLQGR ITLPTRSSAD RPIDLQSEGN 540 REKGRHQERS SPARPVNYKG RHHDKIKRPV VSDVRNPVVQ PIRREEVDPL NFAGPKSLAE 600 LKGAKLSEKL QDQKKIKIGK PLGHQESDDF LSFGGPKSLS VILKRKRENA FGNGANCCNG 660 DKNTERDNVG GIGSSILVAT EREDDFTANC CKESKVAGVD EEKEVGIIPM EGEELPNDDQ 720 ASAGGHTHEV EDGMIAGATD DQELENYGQS YQMN

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MGGCSGLACY MKGLMEFKLS LTKGIQACIW DGAELERASY QVEAISYLFF QVYRAEALRS  60
VMAHFFVELR TNKALSPSRS QATHEQWFVC SLRDRIGFGL DFYPGARPTL GNIAPRGTEC  120
EYRHSEGARV NPRDCWYWLN GNCLNPKCTF RHPPLDGLLG MLGTTSELAP PPSQTVALTH  180
VPAAHGPAGF NLNKQNVPCY YFQKGHCLKG DRCPFMHGPQ QRDNPVPQQY SSPPDAVSPL  240
KKESWCLKER TSQQSISKSD FDKPIEVPLA PVKPAGKSEN VLNNGFAIKE TASPYPSEDG  300
LPMFQQSNVP VGSGIALGWP RSRQSQPIDD YLQNAREADE FLRESSPGFD VLVNNMEDSE  360
YFCDEGDFER VPVQDARNLN HVSDFDYHHS DYESVPSLER DQDNGVGVHD RHGRLDNHYG  420
REQQRTSSER ILERASMHEK RMLQGQESSH DIDGSDLRHR LLKQRKLNGS KSIFSPDHCG  480
KLYQRHNYFV DKERYRAHHA CRGPRLFPME SSVSSRLQGR ITLPTRSSAD RPIDLQSEGN  540
REKGRHQERS SPARPVNYKG RHHDKIKRPV VSDVRNPVVQ PIRREEVDPL NFAGPKSLAE  600
LKGAKLSEKL QDQKKIKIGK PLGHQESDDF LSFGGPKSLS VILKRKRENA FGNGANCCNG  660
DKNTERDNVG GIGSSILVAT EREDDFTANC CKESKVAGVD EEKEVGIIPM EGEELPNDDQ  720
ASAGGHTHEV EDGMIAGATD DQELENYGQS YQMN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008792065.1	0.0	zinc finger CCCH domain-containing protein 32-like
TrEMBL	A0A2H3Y1T8	0.0	A0A2H3Y1T8_PHODC; zinc finger CCCH domain-containing protein 32-like
STRING	XP_008792065.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6604	32	41