PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s975321g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 948aa MW: 103702 Da PI: 4.3533 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.2e-15 | 32 | 75 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+e+d ll+++vk++G ++W Ia+++ +Rt qc++rw +yl PDK_30s975321g005 32 WTPEDDRLLIKLVKKYGEKNWMIIANRLK-KRTSRQCRERWINYL 75 ****************************9.*************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.7e-15 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT +E+ +++ a+++lG++ W Ia++++ gRt++ +k++w++ PDK_30s975321g005 81 RDAWTDQEERIIILAHQELGNK-WVEIAKRLP-GRTENGLKNHWNST 125 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.84 | 25 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-15 | 28 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.29E-28 | 30 | 122 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-24 | 32 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.3E-17 | 32 | 89 | No hit | No description |
CDD | cd00167 | 1.11E-15 | 32 | 75 | No hit | No description |
SMART | SM00717 | 9.7E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.722 | 80 | 130 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-20 | 83 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.89E-10 | 83 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 948 aa Download sequence Send to blast |
MGHTYGQSLA LEDGADTFIP YKPKRPNLVT IWTPEDDRLL IKLVKKYGEK NWMIIANRLK 60 KRTSRQCRER WINYLRPNIK RDAWTDQEER IIILAHQELG NKWVEIAKRL PGRTENGLKN 120 HWNSTKRKLY SGRPWWSTLA KKTPLQEYIK CLEDPSSDVE SVVAALTQNQ ENGSNDCSMA 180 SVNYTSMPAA GPRRCSDSHM SLQDHGTQSS LSQNSIRNLT QSSAPAAPMT PMSMPTFADR 240 AARDCPSDFS ALDLQSTLWQ SYSKSSQSPV MAAAMAATPI SNWNGGCNSG SVVTLPSSYL 300 PNNTGSLTQP LAASGSIMAA PNGNWESRFN YVSGAPMNLT SMPAIELGNG KGTDLQSSCV 360 RNQLSVMVTS AMTALTENRD NGSNNGLVIP NTLTSMPDSV VEVGTGLSST NSASSLLENN 420 FRSLGQPFVA ATPIGDQESG WNINNVDNDL DFITNFDFNN MPDFWSTEVL PNRNEDTDGT 480 RTDSIRQQVL AWTSVFVKEP TGNPESGWNS GLMAPTTLTS MPHIGPNMGE DDVTDLFTYG 540 SPRSHLQNNL GSLDQPAALV APIGSQETGC KNGSMATTTA MSVPATEHYF DKDHLNSIAS 600 LELDNSFNFV SAEMLADLND GISFANTNSI RQQVQASASS VMGVTAGNHE SGCLMAPMAL 660 ASMPTTEFNM AEKDVTNLFA SESTSSLWQN KSRSLDQPST MAAPNGNQES EYNNRSMAST 720 TITSILATEP GMHENDDMPD YMIAKVSSDK NEDFSCTNID QPRKDPLAEK GCGMVVESST 780 IDWGLDDLPD YIFMEVLPDG DNDSSNTYTN QPHRGPLTEE GCEVEMEMLL QGDDEINCTN 840 VEQSIGGPSI ENSCGMEMVG SSNVANRACD DLPYMVTEVL PQRDNFSWTN TDQPREDASE 900 KGSGMQMVGN NAAEKMACEN EKRNLNQRDI DLLEMVSFNK FNTWGSMI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-38 | 32 | 128 | 7 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 3e-38 | 32 | 128 | 7 | 103 | C-Myb DNA-Binding Domain |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008775126.2 | 0.0 | uncharacterized protein LOC103695542 | ||||
TrEMBL | A0A2H3WXC1 | 0.0 | A0A2H3WXC1_PHODC; uncharacterized protein LOC103695542 | ||||
STRING | XP_008775126.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-42 | myb domain protein 98 |