PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s975321g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 948aa MW: 103702 Da PI: 4.3533

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s975321g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.2e-15	32	75	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+e+d ll+++vk++G ++W Ia+++ +Rt qc++rw +yl PDK_30s975321g004 32 WTPEDDRLLIKLVKKYGEKNWMIIANRLK-KRTSRQCRERWINYL 75 **************************9.***********97 PP
2	Myb_DNA-binding	46.3	9.7e-15	81	125	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++WT +E+ +++ a+++lG++ W Ia++++ gRt++ +k++w++ PDK_30s975321g004 81 RDAWTDQEERIIILAHQELGNK-WVEIAKRLP-GRTENGLKNHWNST 125 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.84	25	79	IPR017930	Myb domain
SMART	SM00717	6.4E-15	28	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.29E-28	30	122	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-24	32	82	IPR009057	Homeodomain-like
Pfam	PF13921	2.3E-17	32	89	No hit	No description
CDD	cd00167	1.11E-15	32	75	No hit	No description
SMART	SM00717	9.7E-14	80	128	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.722	80	130	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-20	83	128	IPR009057	Homeodomain-like
CDD	cd00167	1.89E-10	83	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 948 aa Download sequence Send to blast
MGHTYGQSLA LEDGADTFIP YKPKRPNLVT IWTPEDDRLL IKLVKKYGEK NWMIIANRLK 60 KRTSRQCRER WINYLRPNIK RDAWTDQEER IIILAHQELG NKWVEIAKRL PGRTENGLKN 120 HWNSTKRKLY SGRPWWSTLA KKTPLQEYIK CLEDPSSDVE SVVAALTQNQ ENGSNDCSMA 180 SVNYTSMPAA GPRRCSDSHM SLQDHGTQSS LSQNSIRNLT QSSAPAAPMT PMSMPTFADR 240 AARDCPSDFS ALDLQSTLWQ SYSKSSQSPV MAAAMAATPI SNWNGGCNSG SVVTLPSSYL 300 PNNTGSLTQP LAASGSIMAA PNGNWESRFN YVSGAPMNLT SMPAIELGNG KGTDLQSSCV 360 RNQLSVMVTS AMTALTENRD NGSNNGLVIP NTLTSMPDSV VEVGTGLSST NSASSLLENN 420 FRSLGQPFVA ATPIGDQESG WNINNVDNDL DFITNFDFNN MPDFWSTEVL PNRNEDTDGT 480 RTDSIRQQVL AWTSVFVKEP TGNPESGWNS GLMAPTTLTS MPHIGPNMGE DDVTDLFTYG 540 SPRSHLQNNL GSLDQPAALV APIGSQETGC KNGSMATTTA MSVPATEHYF DKDHLNSIAS 600 LELDNSFNFV SAEMLADLND GISFANTNSI RQQVQASASS VMGVTAGNHE SGCLMAPMAL 660 ASMPTTEFNM AEKDVTNLFA SESTSSLWQN KSRSLDQPST MAAPNGNQES EYNNRSMAST 720 TITSILATEP GMHENDDMPD YMIAKVSSDK NEDFSCTNID QPRKDPLAEK GCGMVVESST 780 IDWGLDDLPD YIFMEVLPDG DNDSSNTYTN QPHRGPLTEE GCEVEMEMLL QGDDEINCTN 840 VEQSIGGPSI ENSCGMEMVG SSNVANRACD DLPYMVTEVL PQRDNFSWTN TDQPREDASE 900 KGSGMQMVGN NAAEKMACEN EKRNLNQRDI DLLEMVSFNK FNTWGSMI

Sequence ? help Back to Top

Protein Sequence Length: 948 aa Download sequence Send to blast

MGHTYGQSLA LEDGADTFIP YKPKRPNLVT IWTPEDDRLL IKLVKKYGEK NWMIIANRLK  60
KRTSRQCRER WINYLRPNIK RDAWTDQEER IIILAHQELG NKWVEIAKRL PGRTENGLKN  120
HWNSTKRKLY SGRPWWSTLA KKTPLQEYIK CLEDPSSDVE SVVAALTQNQ ENGSNDCSMA  180
SVNYTSMPAA GPRRCSDSHM SLQDHGTQSS LSQNSIRNLT QSSAPAAPMT PMSMPTFADR  240
AARDCPSDFS ALDLQSTLWQ SYSKSSQSPV MAAAMAATPI SNWNGGCNSG SVVTLPSSYL  300
PNNTGSLTQP LAASGSIMAA PNGNWESRFN YVSGAPMNLT SMPAIELGNG KGTDLQSSCV  360
RNQLSVMVTS AMTALTENRD NGSNNGLVIP NTLTSMPDSV VEVGTGLSST NSASSLLENN  420
FRSLGQPFVA ATPIGDQESG WNINNVDNDL DFITNFDFNN MPDFWSTEVL PNRNEDTDGT  480
RTDSIRQQVL AWTSVFVKEP TGNPESGWNS GLMAPTTLTS MPHIGPNMGE DDVTDLFTYG  540
SPRSHLQNNL GSLDQPAALV APIGSQETGC KNGSMATTTA MSVPATEHYF DKDHLNSIAS  600
LELDNSFNFV SAEMLADLND GISFANTNSI RQQVQASASS VMGVTAGNHE SGCLMAPMAL  660
ASMPTTEFNM AEKDVTNLFA SESTSSLWQN KSRSLDQPST MAAPNGNQES EYNNRSMAST  720
TITSILATEP GMHENDDMPD YMIAKVSSDK NEDFSCTNID QPRKDPLAEK GCGMVVESST  780
IDWGLDDLPD YIFMEVLPDG DNDSSNTYTN QPHRGPLTEE GCEVEMEMLL QGDDEINCTN  840
VEQSIGGPSI ENSCGMEMVG SSNVANRACD DLPYMVTEVL PQRDNFSWTN TDQPREDASE  900
KGSGMQMVGN NAAEKMACEN EKRNLNQRDI DLLEMVSFNK FNTWGSMI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	3e-38	32	128	7	103	C-Myb DNA-Binding Domain
1msf_C	3e-38	32	128	7	103	C-Myb DNA-Binding Domain

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008775126.2	0.0	uncharacterized protein LOC103695542
TrEMBL	A0A2H3WXC1	0.0	A0A2H3WXC1_PHODC; uncharacterized protein LOC103695542
STRING	XP_008775126.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-42	myb domain protein 98