PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s972071g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 29176.2 Da PI: 10.1989 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.9 | 1e-49 | 2 | 126 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPt+ee++ +yL++kvegk++++ e i+ +d+y+++Pw+Lp ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + s PDK_30s972071g002 2 PGFRFHPTEEEIIEFYLRRKVEGKRFDV-ELITFLDLYRYDPWELPGLAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRS 92 9***************************.89***************8777899*************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + +glkktLvfy+g+apkg +t+W+m+eyrl PDK_30s972071g002 93 ENARPIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 126 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.3 | 1 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-25 | 2 | 126 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.79E-56 | 2 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MPGFRFHPTE EEIIEFYLRR KVEGKRFDVE LITFLDLYRY DPWELPGLAA IGEKEWFFYV 60 PRDRKYRNGD RPNRVTTSGY WKATGADRMI RSENARPIGL KKTLVFYSGK APKGIRTSWI 120 MNEYRLPRSE TDRYHKAEIS LCRVYKRSGV EDHLSVMHKP SSSKSTRPDK KHKRQAHSSL 180 QLPTADEFNK MVGDRRGYLN QTNQFIAMPS QHQLLSLTGL PNSLETISDN LWQWNQIHEA 240 GKDFTNFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-55 | 2 | 147 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-55 | 2 | 147 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-55 | 2 | 147 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-55 | 2 | 147 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-55 | 2 | 147 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-55 | 2 | 147 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-55 | 2 | 147 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-55 | 2 | 147 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-55 | 2 | 147 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-55 | 2 | 147 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-55 | 2 | 147 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-55 | 2 | 147 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-55 | 2 | 147 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-55 | 2 | 147 | 19 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008801519.1 | 1e-128 | NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 1e-103 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A2H3YP36 | 1e-127 | A0A2H3YP36_PHODC; NAC domain-containing protein 35-like | ||||
STRING | XP_008801519.1 | 1e-128 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-106 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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