PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s971561g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 283aa    MW: 32053.7 Da    PI: 11.1527
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s971561g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.51e-13226251126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +ktelC+ + ++G+C+yG+ C+FaHg
  PDK_30s971561g001 226 FKTELCNKWEESGECPYGEHCQFAHG 251
                        79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.6E-18220258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-10222257IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-8225252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582225253IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-11226251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
STSKIHVLLL GIVRSLRLPM LKTYVNCEVR SGRIQRKKKK KKKKKKKKKK KKKKKKRRSA  60
RGRSRHGNGQ ESRRRLGVRG HSFYSSSDGV FHLRALIPEL PRGQLRWVGA GWRDSSRQDA  120
AGAGDTHQWR PPQENRFARR AAEKRVLRLP KSVSVRSNGS LKLNQGVLTA NGNGRLRVSS  180
PVMVGSEQQK VYVGGESKKK GERGGREEDE EGGEALEMEV YNQGMFKTEL CNKWEESGEC  240
PYGEHCQFAH GITELRPVIR HPRYKTELSY VDSGAGENSP VDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-14226268446Butyrate response factor 2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13441QRKKKKKK
24357KKKKKKKKKKKKKRR
34457KKKKKKKKKKKKRR
44655KKKKKKKKKK
54957KKKKKKKRR
65157KKKKKRR
75257KKKKRR
85357KKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086583e-49AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence.
GenBankAP0029103e-49AP002910.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0707D10.
GenBankAP0149573e-49AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126093e-49CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924639.15e-58zinc finger CCCH domain-containing protein 9
TrEMBLA0A2I0WME42e-41A0A2I0WME4_9ASPA; Zinc finger CCCH domain-containing protein 9
STRINGXP_008800937.15e-59(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-31C3H family protein