PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s969931g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 250aa    MW: 26889.2 Da    PI: 7.5483
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s969931g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.52.8e-16210243132
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                        C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ 
  PDK_30s969931g003 210 CHHCGISSkaTPMMRRGPDGPRTLCNACGLMWAN 243
                        *****9999***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.89274109IPR010399Tify domain
SMARTSM009792.7E-1274109IPR010399Tify domain
PfamPF062004.3E-1377108IPR010399Tify domain
PfamPF062034.2E-16135177IPR010402CCT domain
PROSITE profilePS5101713.304135177IPR010402CCT domain
SMARTSM004013.9E-5204249IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.8E-10208245No hitNo description
Gene3DG3DSA:3.30.50.106.6E-14209244IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.95E-12209244No hitNo description
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
PfamPF003206.0E-14210244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MPLPGRIDDA PGGGGEGHLI VAADAQAIQQ HAEDGGGGDA MEDDHDGAAE GEGMEGDVPS  60
DHANLRDPLG MVAPQVGANQ LTLSFQGEVY VFDSVSPEKV QAVLLLLGGR EINTGLASGP  120
SSSNPYNKRS NFPQRVASLM RFREKRKERN FDKKIRYNVR KEVALRMQRN RGQFTSSKSK  180
PEDATAGIAS LDASQRWGSV EGRPESAATC HHCGISSKAT PMMRRGPDGP RTLCNACGLM  240
WANKVIMLYK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811434.10.0GATA transcription factor 20-like
SwissprotQ5Z4U51e-100GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2H3ZBR91e-180A0A2H3ZBR9_PHODC; GATA transcription factor 20-like
STRINGXP_008811434.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-71ZIM-LIKE 2