PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s969461g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 75aa MW: 8661.13 Da PI: 10.7586

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s969461g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.6	5.9e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+l+e++s PDK_30s969461g004 9 KRIENKINRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSNRGRLFEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.1E-40	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.983	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-32	2	70	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.84E-40	2	70	No hit	No description
PRINTS	PR00404	6.5E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSN RGRLFEFCSS 60 SSAQKIERIQ MDVVE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	2e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF411846	4e-82	AF411846.1 Elaeis guineensis MADS box transcription factor (AGL2-4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786031.1	4e-37	MADS-box protein EJ2 isoform X2
Refseq	XP_026659396.1	4e-37	truncated transcription factor CAULIFLOWER A isoform X1
Swissprot	Q7Y040	6e-36	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	A0A1L1WL19	5e-36	A0A1L1WL19_9ASPA; MADS36
TrEMBL	A0A2H3XMI5	9e-36	A0A2H3XMI5_PHODC; MADS-box protein EJ2 isoform X2
TrEMBL	A0A3Q0HXT2	9e-36	A0A3Q0HXT2_PHODC; truncated transcription factor CAULIFLOWER A isoform X1
STRING	XP_008786031.1	2e-36	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	1e-37	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]