PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s968991g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 330aa    MW: 36982.5 Da    PI: 7.4369
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s968991g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.24.1e-50181432128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eel+ +yL++kvegk++++ e i  +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg dk + 
  PDK_30s968991g001  18 MPGFRFHPTEEELIEFYLRRKVEGKRFNM-ELIIFLDLYRYDPWELPAFATIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADKMIR 108
                        79***************************.8899*************8777899************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        s++++ +glkktLvfy+g+apkg++t+W+m+eyrl
  PDK_30s968991g001 109 SENSRPIGLKKTLVFYSGKAPKGVRTSWIMNEYRL 143
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5617164IPR003441NAC domain
PROSITE profilePS5100555.19217164IPR003441NAC domain
PfamPF023654.5E-2519143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSGGGNGEKD GHEHDLVMPG FRFHPTEEEL IEFYLRRKVE GKRFNMELII FLDLYRYDPW  60
ELPAFATIGE KEWFFYVPRD RKYRNGDRPN RVTTSGYWKA TGADKMIRSE NSRPIGLKKT  120
LVFYSGKAPK GVRTSWIMNE YRLPQEGTDR NHKAEISLCR VYKRGGVGDE LSGMHKPFSS  180
NATGPDKKHK NNHHPSTFFT TLTADSSSSE LENIHEVGVC SGANDMSVYG ATAPVLNMTT  240
SLEQEGTSLN SSDTLVPAGT LLPSTSSTAT TTAAEFSKMV AYHQGYLNLT DQFVPVPPHL  300
LTPNSLATIS DKLWSWNPLH DAGKDFTTFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-551916419165NO APICAL MERISTEM PROTEIN
1ut4_B1e-551916419165NO APICAL MERISTEM PROTEIN
1ut7_A1e-551916419165NO APICAL MERISTEM PROTEIN
1ut7_B1e-551916419165NO APICAL MERISTEM PROTEIN
4dul_A1e-551916419165NAC domain-containing protein 19
4dul_B1e-551916419165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017696958.10.0NAC domain-containing protein 35-like
TrEMBLA0A2H3ZLC10.0A0A2H3ZLC1_PHODC; NAC domain-containing protein 35-like
STRINGXP_008781961.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-100NAC domain containing protein 35