PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s967971g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YC | ||||||||
Protein Properties | Length: 276aa MW: 30426.7 Da PI: 6.3019 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.9 | 4.8e-56 | 86 | 190 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdif PDK_30s967971g001 86 QLQAFWANQmleIEQAADFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIF 177 89*******8889******************************************************************************* PP NF-YC 90 dflvdivprdelk 102 dflvdivprdelk PDK_30s967971g001 178 DFLVDIVPRDELK 190 **********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 9.51E-34 | 75 | 180 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-21 | 108 | 171 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-37 | 109 | 186 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MEQSMQPSQP VMGVVTGAAQ IAYAAPTYQS AAMVTGAPAV IGAMAPPAQP TSTFPTSPAQ 60 LTSQHQLAYQ QVQQFHHQQQ QQQQQQLQAF WANQMLEIEQ AADFKNHSLP LARIKKIMKA 120 DEDVRMISAE APVIFAKACE MFILELTLRS WIHTEENKRR TLQKNDIAAA ITRTDIFDFL 180 VDIVPRDELK EEGIGIARAA LPTMGAPADS VPYYYVPAQH QVAGPGLIMG KPVDQATTAA 240 MYAAQPPHPM AYMWQQPQAQ PQQQQAQHQQ QMPGSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-58 | 94 | 186 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 164 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008775727.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_008775728.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_008775729.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_026656552.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_026656553.1 | 0.0 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q655V5 | 1e-100 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A2H3WYR7 | 0.0 | A0A2H3WYR7_PHODC; nuclear transcription factor Y subunit C-4-like | ||||
STRING | XP_008775725.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2703 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 5e-74 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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