PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s966651g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Nin-like

Protein Properties

Length: 717aa MW: 78963 Da PI: 6.1412

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s966651g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	25.2	3.2e-08	526	562	1	28
RWP-RK 1 aekeisledlskyFslpikdAAkeLg.........vc 28 aek+isle+l++yFs+++kdAAk+Lg vc PDK_30s966651g002 526 AEKSISLEVLQQYFSGSLKDAAKSLGdtggrslppVC 562 589**********************966666666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	2.0E-5	92	170	IPR029016	GAF domain-like
SuperFamily	SSF54277	1.24E-22	615	708	No hit	No description
PROSITE profile	PS51745	18.27	622	704	IPR000270	PB1 domain
SMART	SM00666	4.8E-24	622	704	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.4E-24	622	703	No hit	No description
CDD	cd06407	2.19E-34	623	703	No hit	No description
Pfam	PF00564	7.6E-14	623	703	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence Send to blast
NVDVRYGKVN ANNSQARQLP MPAVEGNADD SCVIKERMTQ ALRYFKESTD QHVLVQVWAP 60 MKKGDRCFLT TSGQPFVLGP QSTRLLQYRT VSLMYIFSVD EDGEGYLGLP GRVFRHRQPE 120 WTPNVQYYSS KEYPRLTHAL HYNVQGTLAL PVFDPSGQSC IGVIELIMTS QKINYAREVD 180 KVCKALQAAL LTLTCYVALV DSTELCEQHI LIILQAVNLR SSEILDHPNI QISNEGRQSA 240 LAEILEVLTV VCEAHKLPLA QAWVPCKCRT ILAHGGGLKK ICSSFDGSCM GQVCMSTTDV 300 AFYVIDAHMW GFREACVEHH LQIGQGVAGR AFALRRPCFA EDVTKFSKSE YPLVHYARMF 360 GLVGCLAICL QSTHSGDDDY VLEFFLPHDC KNLIEQQALL DSISALMKQC FRSLKVVSEL 420 ELQEGISFEI ISMFANENHG FEPDHICSQI CDAHLHTSPE TYILEGHDDS QNEGNVTSDS 480 HVLHLPTHAN AEKASNIHFD SGGGGASTAR LSNKNNGAPE KRRGKAEKSI SLEVLQQYFS 540 GSLKDAAKSL GDTGGRSLPP VCLMRGVNVA KPQPPLAGMM IEDSGSSKDL KNLCSNAGEG 600 CQDEHAMAAN PLNPMAMQET KTLTIKASHK EDIIRFRLPC TAGIVALKDE VAKRLKLEVG 660 TFDIKYLDDD HEWVMLACNA DLEECIEMSR LSGSPVIRLA VHDIVAHLGS SYGSSGD

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence Send to blast

NVDVRYGKVN ANNSQARQLP MPAVEGNADD SCVIKERMTQ ALRYFKESTD QHVLVQVWAP  60
MKKGDRCFLT TSGQPFVLGP QSTRLLQYRT VSLMYIFSVD EDGEGYLGLP GRVFRHRQPE  120
WTPNVQYYSS KEYPRLTHAL HYNVQGTLAL PVFDPSGQSC IGVIELIMTS QKINYAREVD  180
KVCKALQAAL LTLTCYVALV DSTELCEQHI LIILQAVNLR SSEILDHPNI QISNEGRQSA  240
LAEILEVLTV VCEAHKLPLA QAWVPCKCRT ILAHGGGLKK ICSSFDGSCM GQVCMSTTDV  300
AFYVIDAHMW GFREACVEHH LQIGQGVAGR AFALRRPCFA EDVTKFSKSE YPLVHYARMF  360
GLVGCLAICL QSTHSGDDDY VLEFFLPHDC KNLIEQQALL DSISALMKQC FRSLKVVSEL  420
ELQEGISFEI ISMFANENHG FEPDHICSQI CDAHLHTSPE TYILEGHDDS QNEGNVTSDS  480
HVLHLPTHAN AEKASNIHFD SGGGGASTAR LSNKNNGAPE KRRGKAEKSI SLEVLQQYFS  540
GSLKDAAKSL GDTGGRSLPP VCLMRGVNVA KPQPPLAGMM IEDSGSSKDL KNLCSNAGEG  600
CQDEHAMAAN PLNPMAMQET KTLTIKASHK EDIIRFRLPC TAGIVALKDE VAKRLKLEVG  660
TFDIKYLDDD HEWVMLACNA DLEECIEMSR LSGSPVIRLA VHDIVAHLGS SYGSSGD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777047.1	0.0	protein NLP3-like isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2H3X1V9	0.0	A0A2H3X1V9_PHODC; protein NLP3-like isoform X1
STRING	XP_008777047.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein