PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s966621g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | Trihelix | ||||||||
Protein Properties | Length: 255aa MW: 28889.6 Da PI: 5.1077 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 111.7 | 4.3e-35 | 52 | 137 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+ +++r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a PDK_30s966621g001 52 RWPKAEVHALIKLRSGLDSRYQEAGPKGPLWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESNRKR-PEDSKTCPYFHQLDA 137 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.178 | 45 | 109 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0081 | 49 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.26E-31 | 51 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-4 | 51 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.4E-24 | 52 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MQPSQQQQEL HQHHQSTEIG RHQVSSSSEL VPVPEQPEPV GTVNFEPVSP SRWPKAEVHA 60 LIKLRSGLDS RYQEAGPKGP LWEEISAGMQ RLGYNRSAKR CKEKWENINK YFKKVKESNR 120 KRPEDSKTCP YFHQLDALYR KKHLGSGGSG SNSGGGIQRH QEQQTDPDPN PQERKDIVKE 180 LMDQRQQQPT MEDYDKMEEP DSDNIDQDDD EDDDEDDEDG KMQYKIQFQR PNVGGGGGTT 240 STAAPTAGSF LAMVQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791630.1 | 2e-98 | trihelix transcription factor GTL1 isoform X1 | ||||
Refseq | XP_008791631.1 | 4e-99 | trihelix transcription factor GTL1 isoform X2 | ||||
TrEMBL | A0A2H3Y0K6 | 4e-97 | A0A2H3Y0K6_PHODC; trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A2H3Y0M4 | 9e-98 | A0A2H3Y0M4_PHODC; trihelix transcription factor GTL1 isoform X2 | ||||
STRING | XP_008791630.1 | 6e-98 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-53 | Trihelix family protein |