PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s963251g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26482.3 Da PI: 6.9556 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00052 | 196 | 232 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ +Lr ++P +++ ++L +Av+Y+ksL PDK_30s963251g002 196 REKMKKMVKTLRGIIPGG-----DRMDTPAVLDEAVKYLKSL 232 7999999*********94.....59***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.398 | 183 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-5 | 190 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.03E-6 | 192 | 237 | No hit | No description |
SuperFamily | SSF47459 | 5.1E-8 | 194 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-6 | 194 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MQRDRRFFSK KASRSRGYEA GSCALDSPAG ARDTDASAAA PSFGEALTGM KHHEFPVPLN 60 GVEFQPSETC PKNFVIFDQT YNKSRVMFHP SLAHNFGSSS FGVHGAHAHE AGKSTVGDYY 120 NAGEYSSPHI EDAEDIDALL SSEEDDDVVS TGRTPGNWGG GSSPDSSCSF SDGMRSSKLK 180 FNSTNAGSGS GSERKREKMK KMVKTLRGII PGGDRMDTPA VLDEAVKYLK SLKVEVKKLG 240 VQNLDS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784424.1 | 0.0 | transcription factor bHLH144-like | ||||
TrEMBL | A0A2H3XIS6 | 1e-180 | A0A2H3XIS6_PHODC; transcription factor bHLH144-like | ||||
STRING | XP_008784424.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2083 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 2e-34 | bHLH family protein |