PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s956351g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 227aa MW: 25870.8 Da PI: 9.3096 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.8 | 1.3e-09 | 8 | 42 | 8 | 39 |
HCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 rr+++NReAAr+sR+RKka++++Le + ++Le PDK_30s956351g001 8 RRLAQNREAARKSRLRKKAYVQQLESsriRLQQLE 42 9***********************97222444444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0021 | 6 | 77 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 5.42E-23 | 6 | 57 | No hit | No description |
SuperFamily | SSF57959 | 3.06E-7 | 7 | 48 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 8 | 23 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.726 | 8 | 47 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.5E-7 | 8 | 44 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.7E-8 | 8 | 49 | No hit | No description |
Pfam | PF14144 | 8.3E-32 | 85 | 160 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MAWFTTLRRL AQNREAARKS RLRKKAYVQQ LESSRIRLQQ LEQELQRARS QGLFLGGGSA 60 SGDLSSGAAM FDMEYARWLD DNSKHMSELR GGLQAHLPDG NLAVIVDECI AHYDELFRLK 120 GVAAKSDVFH LLTGMWATPA ERCFLWMGGF KPSELLKILM PQLDPLTEQQ LMGICNHSYK 180 NIKRLCQSKI QTESKQEETC INTRKITRSR LLFNTLSDSN SFFPPPC |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804825.3 | 1e-121 | transcription factor LG2 | ||||
Swissprot | O49067 | 1e-101 | LG2_MAIZE; Transcription factor LG2 | ||||
TrEMBL | A0A2H3YWG1 | 1e-120 | A0A2H3YWG1_PHODC; transcription factor LG2 | ||||
STRING | XP_008804825.1 | 1e-122 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25378 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08320.2 | 4e-71 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|