PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s953521g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24531.8 Da PI: 11.6671 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 121 | 165 | 2 | 49 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaa 49 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta eAaka+++a PDK_30s953521g001 121 RYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAVEAAKAYDRA 165 7********.**********9...4334*******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.14E-17 | 121 | 169 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.75E-20 | 121 | 165 | No hit | No description |
PROSITE profile | PS51032 | 19.19 | 121 | 165 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-12 | 121 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-25 | 121 | 171 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-22 | 121 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MASIVDDDST LDLIREHLLG DLPLSPLPPP SAPHGIAVSD YLDTTQPFSG SGRIDPYGVL 60 EAYRFAEPVD PMIRFGGDSQ QASDLCLPSL TISLPPVRKF EIEWTEAAAA VGPAEHNDGR 120 RYRGVRQRPW GKFAAEIRDP NRRGSRIWLG TFDTAVEAAK AYDRAGRPMT APLSRCAAAR 180 RSSTSPTRSA TPAAASRPLH RRSRRRGRGR GRRPRRRRRR K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 119 | 169 | 3 | 53 | ATERF1 |
3gcc_A | 3e-19 | 119 | 169 | 3 | 53 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 211 | RSRRRGRGRGR |
2 | 203 | 220 | RRRGRGRGRRPRRRRRRK |
3 | 211 | 216 | RRPRRR |
4 | 211 | 218 | RRPRRRRR |
5 | 211 | 219 | RRPRRRRRR |
6 | 212 | 219 | RPRRRRRR |
7 | 214 | 220 | RRRRRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026658220.1 | 1e-118 | ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A3Q0HXY9 | 1e-116 | A0A3Q0HXY9_PHODC; ethylene-responsive transcription factor ERF107-like | ||||
STRING | XP_008781946.1 | 1e-115 | (Phoenix dactylifera) | ||||
STRING | XP_008786269.1 | 1e-116 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 6e-27 | ethylene responsive element binding factor 5 |