PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s951241g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | G2-like | ||||||||
Protein Properties | Length: 445aa MW: 49661.7 Da PI: 6.0226 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.1 | 1.1e-29 | 211 | 265 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++Wt+eLHe+Fv+av+ LGG+++AtPk i+ m+++gLt +hvkSHLQkYRl PDK_30s951241g002 211 KSRMQWTQELHESFVQAVNDLGGADRATPKCIVIKMGIPGLTKDHVKSHLQKYRL 265 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 210 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.56E-14 | 210 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-23 | 211 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-7 | 213 | 264 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MTYHASRNVG SSMFGSEWNM SLPVANIPTN WHGPSGLNEE NVPTTMPDIH EIGSYQQPCS 60 PLLVSLIHQE GLNQCHSLPN LTSSSSTSTK STDICLQSSI HYTDRYASSS SALEQYPYSG 120 NMFPLLQIHL SSMQTSAPTS LQGLGLTYQP NEDAQIPGDI DDILPSAVEQ EHRMESDQPK 180 QIILSNGNQD RYEIIGVNQE AQVSEVNVGN KSRMQWTQEL HESFVQAVND LGGADRATPK 240 CIVIKMGIPG LTKDHVKSHL QKYRLSRYRS EGKEDKRPSC PEGKKRNATE DSGNPNLSSN 300 ESETLHMQWK LQKTLHEQLK WQYYCANVVM ALNIIRKLQL QTKENGRQLQ KFMEDQYKVR 360 EAFFQATQSM SMTKGVATEG TLAPFSSDKL PVSLDEEHSM KDGMLSDLAK LDVSIDVELA 420 SLSYKRARID AESSKATISG NVFQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-20 | 211 | 269 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-20 | 211 | 269 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-20 | 211 | 269 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-20 | 211 | 269 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-20 | 211 | 269 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-20 | 211 | 269 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-20 | 211 | 269 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-20 | 211 | 269 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026663015.1 | 0.0 | myb family transcription factor PHL5-like | ||||
Refseq | XP_026663239.1 | 0.0 | myb family transcription factor PHL5-like | ||||
TrEMBL | A0A2H3YKJ3 | 0.0 | A0A2H3YKJ3_PHODC; myb family transcription factor PHL5-like | ||||
STRING | XP_008799117.1 | 0.0 | (Phoenix dactylifera) | ||||
STRING | XP_008799992.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50857 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04450.2 | 4e-32 | G2-like family protein |