PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s948451g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HSF

Protein Properties

Length: 332aa MW: 37130 Da PI: 6.6375

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s948451g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.2	3e-34	19	111	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 F+ k+y++++d++++ +i+w + +nsf+vld+ +f++ +Lp+yFkhsnf+SFvRQLn+YgFkkv+ ++ weF+h+sF +g+++l PDK_30s948451g002 19 FVAKTYQMVNDPRTDAWIRWGNGNNSFLVLDPADFSHLLLPSYFKHSNFSSFVRQLNTYGFKKVDPDR---------WEFAHESFLRGQTHL 101 9**************************************************************999.........*********** PP XXXXXXXXXX CS HSF_DNA-bind 94 lekikrkkse 103 l i r+k++ PDK_30s948451g002 102 LPCIVRRKKR 111 ****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.9E-37	13	102	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.4E-53	15	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.35E-34	15	108	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	8.2E-17	19	42	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.3E-29	19	108	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.2E-17	57	69	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	58	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.2E-17	70	82	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEEKSSCGKI GYQIQVAPFV AKTYQMVNDP RTDAWIRWGN GNNSFLVLDP ADFSHLLLPS 60 YFKHSNFSSF VRQLNTYGFK KVDPDRWEFA HESFLRGQTH LLPCIVRRKK RNEGGSSSSS 120 SDKKEGIEGE EEEESLFKEL GRLRQEQRAL DEELQRMNKR LQATERRPQQ MMSFLVKVAE 180 DPDFLPRLIL SKKQQLAPEK KRRLVAPSTP PSFSPPPPPP PSLLMASAVS PPLDIDSAAE 240 QTNFSTLEHQ AGPLTLEAER LLLMASSTLV DTGCDGGVGV DNSISYTNVR DSDTVISGNH 300 MRFLPEFGVA ETSSTTQKAV PFPFSLLGHG FV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	7e-22	16	108	17	120	Heat shock factor protein 1
5d5u_B	7e-22	16	108	26	129	Heat shock factor protein 1
5d5v_B	7e-22	16	108	26	129	Heat shock factor protein 1
5d5v_D	7e-22	16	108	26	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924752.2	0.0	heat stress transcription factor C-1b
Refseq	XP_029121098.1	0.0	heat stress transcription factor C-1b
Swissprot	Q6VBA4	1e-79	HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBL	A0A2H3Z8J0	1e-155	A0A2H3Z8J0_PHODC; heat stress transcription factor C-1b-like
STRING	XP_008810034.1	1e-156	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11298	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	8e-73	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]