PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s948281g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 299aa    MW: 33522.5 Da    PI: 5.9643
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s948281g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151153145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       +++WT eE+e lv+a++ +G++ W+ Ia++++ gRt+  +ks++ 
  PDK_30s948281g002 11 KDAWTREEEEVLVCAHQIYGSK-WAEIAKYLP-GRTGIFIKSHLK 53
                       689*******************.*********.**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-17160IPR009057Homeodomain-like
SuperFamilySSF466895.02E-17161IPR009057Homeodomain-like
PROSITE profilePS5129421.729660IPR017930Myb domain
SMARTSM007173.5E-111058IPR001005SANT/Myb domain
PfamPF002492.3E-121153IPR001005SANT/Myb domain
CDDcd001676.17E-91351No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
WLNYLNPAIN KDAWTREEEE VLVCAHQIYG SKWAEIAKYL PGRTGIFIKS HLKSSVKKRL  60
DSFSESGFIE QPLGAVALDL NSDIQSVECP KGEPLKRYAD DFISHDWKLN AGSFNTSNVG  120
LGHQNISPKE QFLDVQSTFT GDSKCLRAGN IHTLPEDSKH LHKVVEPITE DSKCTTPGET  180
NYEPLKSLQQ NLSKSGDLAL RDVNKKFKEK SKMETVGAKY SDGMSNFSWK AEGFKDVLGS  240
EYMHQIGSNN HFDLNKTVRV TGDQLCSSHN FLKHEDSGAT KSVEESLEGV FDMEWDLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1516249110B-MYB
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808105.11e-150transcription factor MYB3R-5-like
TrEMBLA0A2H3Z4V21e-148A0A2H3Z4V2_PHODC; transcription factor MYB3R-5-like
STRINGXP_008808105.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-24myb domain protein 3r-4