PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s946431g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 324aa    MW: 35173.2 Da    PI: 8.0188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s946431g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.24.8e-122853227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       +++ C+++++t  Ck+G+rCkF+H++
  PDK_30s946431g001 28 GESDCPYYMKTQKCKFGSRCKFNHPK 53
                       7889********************96 PP
2zf-CCCH42.31.2e-1379103327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++lC+f+++tG Ck+G++CkF+H++
  PDK_30s946431g001  79 EPLCSFYMKTGKCKFGPNCKFHHPK 103
                        79*********************96 PP
3zf-CCCH37.63.6e-12158182226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++  C+f+++tG CkyG++C+++H+
  PDK_30s946431g001 158 GETDCPFYLKTGSCKYGATCRYNHP 182
                        6789********************9 PP
4zf-CCCH40.54.6e-13209233327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        + +C+f+++tG+Ck+G+rCkF+H++
  PDK_30s946431g001 209 EIECDFYMKTGQCKFGERCKFHHPF 233
                        568********************95 PP
5zf-CCCH43.55.2e-14278301427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C+f+++tGtCk+G++CkF H+p
  PDK_30s946431g001 278 VICSFYMKTGTCKFGATCKFDHPP 301
                        68********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2772654IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-42653IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-92853IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-63056IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-53253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.80276104IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-776103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-779104IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-1179103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-681102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413156184IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7156183IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-10158182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5159184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-5162181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.075206234IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6206233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7209235IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10209233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-5212231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309275302IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-7275301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6277301IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-11278301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-6279299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTAGMTIDRA TVQVPFVPAS ESLPERPGES DCPYYMKTQK CKFGSRCKFN HPKDMLNASV  60
GEVGGEGADN SVLPERPSEP LCSFYMKTGK CKFGPNCKFH HPKDFQIPPN GEDTGNTGQM  120
ESEKDDGAAG GDPMPAKGHV TITPALLHNS KGLPIRPGET DCPFYLKTGS CKYGATCRYN  180
HPDRNCIIIP LLLMQLGGVP TIYPQRPGEI ECDFYMKTGQ CKFGERCKFH HPFDRSAPPI  240
SDAKQSLQQN VKLTLAGLPR RENTIKFAQL LKDHKDAVIC SFYMKTGTCK FGATCKFDHP  300
PPGEAVAMAA GSGTGNGVSA IESG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791420.10.0zinc finger CCCH domain-containing protein 8-like
SwissprotQ941Q31e-114C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2H3Y0M10.0A0A2H3Y0M1_PHODC; zinc finger CCCH domain-containing protein 8-like
STRINGXP_008791420.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-116floral homeotic protein (HUA1)