PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s945381g008
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 651aa    MW: 73196.4 Da    PI: 5.7485
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s945381g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS256.41e-7835159856305
               GRAS  56 svselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147
                          + +y++l +++      ++ l+a++lf  ++P+ k+sh+  Nq+Il+ +e+++rvHi+Df+i +G+QWp++lq L+sRp+g+pslRiTg+
  PDK_30s945381g008 351 CAQAIYNSLVAKRIC---AADILKAYHLFMAACPFKKISHFFSNQTILDVAEKATRVHIVDFGIYYGFQWPCFLQRLSSRPGGAPSLRITGI 439
                        455666666666665...8999********************************************************************** PP

               GRAS 148 gspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                        + p++g   +e++eetg+rLa++++++g+pfe+++ +a ++e++++e+L+++++E+l+Vn+ ++l +l++e+v  +s+r++vL+++++++P+
  PDK_30s945381g008 440 DLPQPGfrPTERIEETGRRLADYCRSFGIPFEYHA-MAAKWETIRVEDLNIDKDEVLIVNCLYRLRNLMEETVVADSPRNKVLNTIRKMNPD 530
                        *****9*****************************.799***************************************************** PP

               GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                        v+++   +  ++++ F++rf eal ++salfd+le+++pre+ +r+ +Er l+gre+ nv++ceg er
  PDK_30s945381g008 531 VFIHGIVNGCYGAPFFVTRFREALFHFSALFDMLETNVPREDAQRQLIERDLFGREVLNVISCEGLER 598
                        *****************************************************************997 PP

2GRAS26.95.5e-09595646323374
               GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        G++ +pl+ +++k+a+  ++ ++ + + v+e+sg+l++gWk+r ++++S W+
  PDK_30s945381g008 595 GLERLPLKPDIVKKARDKVKACYHKDFVVDEDSGWLLQGWKGRIIYALSTWK 646
                        8999*******************889*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.114240651IPR005202Transcription factor GRAS
PfamPF035143.6E-76351598IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MLDKNSFIDL PNYSLDPTLS ATPSVPTTDA TTSSSSAPSA EADSAEDAEI FSDIVLNYIS  60
EMLMEEDMDD KFEQFQEHPA LLAAEKPFYD ILAENFSPPP DQPPLHSNRS PESPDDGANN  120
HYGSSSSSNG VVGDSGSWLF DSLEHQHLQS HPVSFDYSSQ SSFSSANSVG NIVEAGSLPK  180
TAALPDFLTQ SQPAWEQFRR GVEEARRFLP GEHKLVIDLG ANGFSLPQEP KRENELVEVK  240
AEKEEREHPS QGSRGRKNPH SEDLELVEGR RSNKQSAVFP EQTVRTEMFD MILLSNEACT  300
RGRYELRAAM EKEAGKSPQS NQSRGSGGGR GRGKRQPKKE VVDLRTILVH CAQAIYNSLV  360
AKRICAADIL KAYHLFMAAC PFKKISHFFS NQTILDVAEK ATRVHIVDFG IYYGFQWPCF  420
LQRLSSRPGG APSLRITGID LPQPGFRPTE RIEETGRRLA DYCRSFGIPF EYHAMAAKWE  480
TIRVEDLNID KDEVLIVNCL YRLRNLMEET VVADSPRNKV LNTIRKMNPD VFIHGIVNGC  540
YGAPFFVTRF REALFHFSAL FDMLETNVPR EDAQRQLIER DLFGREVLNV ISCEGLERLP  600
LKPDIVKKAR DKVKACYHKD FVVDEDSGWL LQGWKGRIIY ALSTWKPNHA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3634864771380Protein SCARECROW
5b3h_A3e-3634864770379Protein SCARECROW
5b3h_D3e-3634864770379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777105.10.0scarecrow-like protein 9
RefseqXP_008777111.10.0scarecrow-like protein 9
TrEMBLA0A2H3X2120.0A0A2H3X212_PHODC; scarecrow-like protein 9
STRINGXP_008777105.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-138SCARECROW-like 14