PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s943011g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21244.1 Da    PI: 8.7147
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s943011g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.3e-29959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtfskRrngi+KKA E+SvLCd +v+v+ifss+gk+ ey+s
  PDK_30s943011g002  9 KRIENSTNRQVTFSKRRNGIIKKAREISVLCDSQVSVVIFSSSGKMSEYCS 59
                       79***********************************************96 PP
2K-box721.8e-2471141171
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                        yq++sgk+l++a +e+l+ e++++kke++n+q e+Rhl+GedL+sL  keL  +e++L+++l  +R+k+ +
  PDK_30s943011g002  71 YQHNSGKKLWDARHENLSAEIDRIKKENDNMQIELRHLKGEDLNSLHPKELIPIEDALQNGLIGVRDKQRH 141
                        8999***************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.637161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-36296IPR002100Transcription factor, MADS-box
CDDcd002651.57E-41280No hitNo description
PRINTSPR004046.6E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.0E-1483141IPR002487Transcription factor, K-box
PROSITE profilePS5129711.31784185IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISVLCD SQVSVVIFSS SGKMSEYCSS  60
SATLSHMLER YQHNSGKKLW DARHENLSAE IDRIKKENDN MQIELRHLKG EDLNSLHPKE  120
LIPIEDALQN GLIGVRDKQR HQELAMDANV RELELGYPPK DRDFASQMPL AFHVQPIQPN  180
LQENN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17160160MEF2 CHIMERA
6byy_B1e-17160160MEF2 CHIMERA
6byy_C1e-17160160MEF2 CHIMERA
6byy_D1e-17160160MEF2 CHIMERA
6bz1_A1e-17160160MEF2 CHIMERA
6bz1_B1e-17160160MEF2 CHIMERA
6bz1_C1e-17160160MEF2 CHIMERA
6bz1_D1e-17160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2271951e-175AF227195.1 Elaeis guineensis MADS box transcription factor (GLO1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783315.11e-130MADS-box transcription factor 2-like
SwissprotQ407024e-93MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A2H3XG661e-129A0A2H3XG66_PHODC; MADS-box transcription factor 2-like
STRINGXP_008783315.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]