PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s942951g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27236.9 Da    PI: 9.528
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s942951g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.84.6e-31958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
  PDK_30s942951g001  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 58
                       79***********************************************8 PP
2K-box110.12.4e-36771734100
              K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                        s++ s++ea+ +++qqe++kL+++i nLq+++R+l+Ge+L+s++l++L+qLe +Lek+++kiR+kKnelll++ie++qk+e elq++n++Lr
  PDK_30s942951g001  77 SNSGSVSEANFQYYQQESSKLRQQITNLQNSNRNLMGESLGSMNLRDLKQLEGRLEKGINKIRTKKNELLLAEIEYMQKRELELQSANMYLR 168
                        444559************************************************************************************** PP

              K-box  96 kklee 100
                        +k+ e
  PDK_30s942951g001 169 NKITE 173
                        **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.852161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-33274IPR002100Transcription factor, MADS-box
CDDcd002651.92E-44271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-32323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2787171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.44587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALVIFST RGRLYEYAND  60
SVKGTIERYK KACTDTSNSG SVSEANFQYY QQESSKLRQQ ITNLQNSNRN LMGESLGSMN  120
LRDLKQLEGR LEKGINKIRT KKNELLLAEI EYMQKRELEL QSANMYLRNK ITENERAQQQ  180
MNMLTPTTEY EVMPPYDSRN FLPMNLMQSN QHYSHQQQTA LQLGYQLALD HQIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q2e-20169169Myocyte-specific enhancer factor 2B
1tqe_R2e-20169169Myocyte-specific enhancer factor 2B
1tqe_S2e-20169169Myocyte-specific enhancer factor 2B
6c9l_A2e-20169169Myocyte-specific enhancer factor 2B
6c9l_B2e-20169169Myocyte-specific enhancer factor 2B
6c9l_C2e-20169169Myocyte-specific enhancer factor 2B
6c9l_D2e-20169169Myocyte-specific enhancer factor 2B
6c9l_E2e-20169169Myocyte-specific enhancer factor 2B
6c9l_F2e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7396990.0AY739699.1 Elaeis guineensis MADS box transcription factor (AG2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794140.11e-164floral homeotic protein AGAMOUS-like isoform X2
RefseqXP_017699065.11e-164floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408721e-121AG_PANGI; Floral homeotic protein AGAMOUS
SwissprotQ93XH41e-121MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2H3ZRM81e-163A0A2H3ZRM8_PHODC; floral homeotic protein AGAMOUS-like isoform X2
STRINGXP_008794138.11e-161(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-113MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]