PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s942051g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 302aa    MW: 34410.7 Da    PI: 6.803
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s942051g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.68.4e-52131401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv +yL+kkv+ ++l++  +i+evd+yk++Pw+Lp k+  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
  PDK_30s942051g002  13 LPPGFRFHPTDEELVLHYLCKKVAYQPLPV-PIIAEVDLYKYDPWELPDKALFGRREWYFFTPRDRKYPNGSRPNRAAGKGYWKATGADKPV 103
                        79****************************.88***************77778999************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + + + +  g+kk Lvfy+g+ap+g ktdW+mheyrl
  PDK_30s942051g002 104 VPRgSARPLGIKKALVFYSGKAPRGLKTDWIMHEYRL 140
                        *9856677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-639165IPR003441NAC domain
PROSITE profilePS5100560.98913165IPR003441NAC domain
PfamPF023651.7E-2614140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRRRDAEAE LNLPPGFRFH PTDEELVLHY LCKKVAYQPL PVPIIAEVDL YKYDPWELPD  60
KALFGRREWY FFTPRDRKYP NGSRPNRAAG KGYWKATGAD KPVVPRGSAR PLGIKKALVF  120
YSGKAPRGLK TDWIMHEYRL AGTNRATNKG SLKLDEWVLC RLYNKKNTWE KMQQQKEEAS  180
FGETMDSLDD TGSDSFRTPE SDIDNDVVLP DFDDMGRLGA YPSQASKGIQ AARASSTAGS  240
QLPAMEQRQK EENEWFMDLK LDDLQSSYMA FGSASAPDML SQDYYTSNLP QLRSNQNDLP  300
PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-9611713174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787999.10.0NAC domain-containing protein 68-like
SwissprotQ52QH41e-118NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2H3XS780.0A0A2H3XS78_PHODC; NAC domain-containing protein 68-like
STRINGXP_008787999.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.17e-88NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]