PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s941721g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 290aa    MW: 32713.7 Da    PI: 6.3569
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s941721g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
  PDK_30s941721g002 14 KGLWSPEEDEKLYNHIIRYGIGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                       678*******************************************97 PP
2Myb_DNA-binding46.58.4e-1567111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+++++E+ l++ +++ lG++ W+ Ia++++ gRt++++k++w++ 
  PDK_30s941721g002  67 RGNFSQQEEGLIIGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 111
                        89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-25664IPR009057Homeodomain-like
PROSITE profilePS5129416.805961IPR017930Myb domain
SuperFamilySSF466899.17E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002497.8E-141461IPR001005SANT/Myb domain
CDDcd001675.77E-111761No hitNo description
PROSITE profilePS5129423.86862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2565116IPR009057Homeodomain-like
SMARTSM007172.7E-1366114IPR001005SANT/Myb domain
PfamPF002493.2E-1367111IPR001005SANT/Myb domain
CDDcd001672.65E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRRSCCPKQ KLRKGLWSPE EDEKLYNHII RYGIGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGNF SQQEEGLIIG LHEILGNRWS QIASHLPGRT DNEIKNFWNS CLKKKLRQRG  120
IDPSTHKPLS EKEAPGEKPG LNNSISSGST EHLPVKPVFD PFPLIDIQVG IDATETNSNL  180
YDQIQQAFRP FNQNELLNSS GFCDYSSVLD VSENYGYGES SSNSSNWNCN VGTDMNNVLG  240
TEVLNWASDN KVDSLTQLQT NGMETFEGKI KACFDIPQGE LANEFNVDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792804.10.0myb-related protein Hv33
SwissprotP200276e-88MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2H3Y3990.0A0A2H3Y399_PHODC; myb-related protein Hv33
STRINGXP_008792804.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.16e-80myb domain protein 86