PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s940251g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 587aa    MW: 65363.6 Da    PI: 4.6599
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s940251g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.41.2e-1372175872374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL+ cA a+s+g++e+a++++++l+ ++s +gdp qRlaay++e+Laar+a+s+ +lykal+++e +   +s++l+a+++++ev+P++kf
  PDK_30s940251g001 217 KQLLFGCASAISEGSMEEAKTIISELRLMVSIQGDPPQRLAAYLVEGLAARIASSGRGLYKALKCKEPP---TSDRLSAMQILFEVCPCFKF 305
                        589*****************************************************************9...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        ++++aN aI ea++ eervHiiDfdi+qG Q+++L+q+LasRp++pp+lRiTgv++pes+  s   l+ +g rL+k+Aeel+vpfef+  +a
  PDK_30s940251g001 306 GFMAANYAIAEAFKDEERVHIIDFDINQGSQYITLIQTLASRPSKPPQLRITGVDDPESVqrSVGGLRIIGMRLEKLAEELEVPFEFRS-IA 396
                        **********************************************************9989999************************.69 PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                         +++d+++++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L++vk+l Pk+v+vveq+++ n+++F+ rf+e  +yysa+f+sl+a++
  PDK_30s940251g001 397 AKTTDVTPSMLDCQPGEALIVNFAFQLHHMPDESVSTVNQRDQLLRMVKGLGPKLVTVVEQDVNANTAPFFPRFVEVYNYYSAVFESLDATM 488
                        999***************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                        pres +r++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF + p+s ++++++++ll+  + d y+++ e+g+l++gW+d++L
  PDK_30s940251g001 489 PRESADRMNVERQCLARDIVNIVACEGTERIERYEAAGKWRARMTMAGFLSSPFSGHVNETIRTLLKSAYCDRYMLKVENGALYFGWEDKTL 580
                        **********************************************************************888******************* PP

               GRAS 368 vsvSaWr 374
                        v++SaW+
  PDK_30s940251g001 581 VVASAWK 587
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.613190567IPR005202Transcription factor GRAS
PfamPF035144.1E-135217587IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MSLIRSADSS ATSYGESNLC TRKSSGDGSD LSMQTFASDK RIYHYGPDSY CSEIYDQQYF  60
RSSPGLAHVN PFYVSNSAIP GSGFRPQVSS ASYNLMANTR SSIITENSYN ACFAAIQHSE  120
SSLSSNISNQ TTLSLSDNQS PEHKMDYDED EVRLKLQELE QALLNDNDEE LLDEEMGIED  180
QWVEPIKDLL LPNSPKESSS DSSVSCIASN RETRTPKQLL FGCASAISEG SMEEAKTIIS  240
ELRLMVSIQG DPPQRLAAYL VEGLAARIAS SGRGLYKALK CKEPPTSDRL SAMQILFEVC  300
PCFKFGFMAA NYAIAEAFKD EERVHIIDFD INQGSQYITL IQTLASRPSK PPQLRITGVD  360
DPESVQRSVG GLRIIGMRLE KLAEELEVPF EFRSIAAKTT DVTPSMLDCQ PGEALIVNFA  420
FQLHHMPDES VSTVNQRDQL LRMVKGLGPK LVTVVEQDVN ANTAPFFPRF VEVYNYYSAV  480
FESLDATMPR ESADRMNVER QCLARDIVNI VACEGTERIE RYEAAGKWRA RMTMAGFLSS  540
PFSGHVNETI RTLLKSAYCD RYMLKVENGA LYFGWEDKTL VVASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6822358625377Protein SCARECROW
5b3h_D2e-6822358625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN2032700.0JN203270.1 Elaeis guineensis putative GRAS family transcription factor protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806489.10.0scarecrow-like protein 1
RefseqXP_026665948.10.0scarecrow-like protein 1
RefseqXP_026665970.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2H3ZJL30.0A0A2H3ZJL3_PHODC; scarecrow-like protein 1
STRINGXP_008806489.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]