PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s938381g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 218aa    MW: 24150.1 Da    PI: 8.3245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s938381g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.91.6e-13170194327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C+f+++tG Ck+G+ CkF+H++
  PDK_30s938381g001 170 QPECQFYMKTGDCKFGAACKFHHPK 194
                        689********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.018167195IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-6168194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6169197IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11170194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5173195IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAKVLIIVCR TISNQLVQSI LNRTSWLSIP RFAIPVLDPL PVSSYYSVST WYGMRQQGVP  60
SIGMIELDNI NLFLVLEILP LSCSMCIRYQ WMSIMLCTHK CAHIYGPLGS VSSSESQQQA  120
PGTVQIHGSS RPSETSAGAQ GIVSSYRSSS ITMGQHALQK DNVFPERLDQ PECQFYMKTG  180
DCKFGAACKF HHPKERLITA PNCLLSPSGL PLRPLLEM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661335.16e-70zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_026661337.16e-70zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_026661338.16e-70zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_026661339.13e-70zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_026661340.13e-70zinc finger CCCH domain-containing protein ZFN-like isoform X3
RefseqXP_026661341.13e-70zinc finger CCCH domain-containing protein ZFN-like isoform X3
SwissprotQ5JLB52e-41C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A3Q0I3851e-68A0A3Q0I385_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1
TrEMBLA0A3Q0I3928e-69A0A3Q0I392_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X3
TrEMBLA0A3Q0I3G38e-69A0A3Q0I3G3_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X2
STRINGXP_008792910.12e-69(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.32e-23zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]