PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s934551g005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 344aa    MW: 38698.9 Da    PI: 4.5664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s934551g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1980129255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+G+r+++ +g+W+AeIrdp++     r++lg+f+taeeAa+a++  +++++g
  PDK_30s934551g005  80 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFDTAEEAARAYDVEARRIRG 129
                        69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-2280137IPR016177DNA-binding domain
CDDcd000181.55E-3380139No hitNo description
Gene3DG3DSA:3.30.730.109.9E-3380138IPR001471AP2/ERF domain
SMARTSM003801.3E-3880143IPR001471AP2/ERF domain
PROSITE profilePS5103224.48780137IPR001471AP2/ERF domain
PRINTSPR003674.6E-128192IPR001471AP2/ERF domain
PfamPF008475.6E-1281129IPR001471AP2/ERF domain
PRINTSPR003674.6E-12103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVALGKKGRK HEVVEIDDDF EADFEDFKDE SEEDEEAEID VEPFAFTAKA PFSREGSITL  60
KSEELCGPAA KSAKRKRKNQ YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF DTAEEAARAY  120
DVEARRIRGK KAKVNFPEAP ANAQKRRHKA NLRTPKPATT EEQKFDQSLK YLNNPDYDFH  180
SSMDHMEVKE LTKPGYLNSL PSLGSSPSSG GTGLVNFLSE QGSNSIDCLD FGWEHETKNP  240
EITSLFAPTI TEGDESRLLE HGSPQKKLKN SSEEAVPADE DSAMKLSEEL SAYESFMKFL  300
EIPYLEGSAD ESIDSLFSCD VAQDGQSTVD LWSFDDLPME NCIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2180137260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-21791381373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0035557e-69JN003555.1 Elaeis guineensis clone Eg-C4-300 LlTF/AP2/EREBP transcription factor (LITF/AP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783120.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A2H3XFS20.0A0A2H3XFS2_PHODC; ethylene-responsive transcription factor 1-like
STRINGXP_008783120.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.32e-42related to AP2 2