PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s934551g005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 38698.9 Da PI: 4.5664 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 80 | 129 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f+taeeAa+a++ +++++g PDK_30s934551g005 80 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFDTAEEAARAYDVEARRIRG 129 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.2E-22 | 80 | 137 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.55E-33 | 80 | 139 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.9E-33 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-38 | 80 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 80 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-12 | 81 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-12 | 81 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-12 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MVALGKKGRK HEVVEIDDDF EADFEDFKDE SEEDEEAEID VEPFAFTAKA PFSREGSITL 60 KSEELCGPAA KSAKRKRKNQ YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF DTAEEAARAY 120 DVEARRIRGK KAKVNFPEAP ANAQKRRHKA NLRTPKPATT EEQKFDQSLK YLNNPDYDFH 180 SSMDHMEVKE LTKPGYLNSL PSLGSSPSSG GTGLVNFLSE QGSNSIDCLD FGWEHETKNP 240 EITSLFAPTI TEGDESRLLE HGSPQKKLKN SSEEAVPADE DSAMKLSEEL SAYESFMKFL 300 EIPYLEGSAD ESIDSLFSCD VAQDGQSTVD LWSFDDLPME NCIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 80 | 137 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-21 | 79 | 138 | 13 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN003555 | 7e-69 | JN003555.1 Elaeis guineensis clone Eg-C4-300 LlTF/AP2/EREBP transcription factor (LITF/AP2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783120.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2H3XFS2 | 0.0 | A0A2H3XFS2_PHODC; ethylene-responsive transcription factor 1-like | ||||
STRING | XP_008783120.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 2e-42 | related to AP2 2 |