PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s934551g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 348aa    MW: 39089.9 Da    PI: 5.2417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s934551g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-20109159155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+G+r+++ +g+W AeIrdp++     r++lg+fgtaeeAa+a++  +++++g
  PDK_30s934551g004 109 SQYRGIRQRP-WGKWTAEIRDPYK---GVRVWLGTFGTAEEAARAYDVEARRIRG 159
                        78********.**********865...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-12109159IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-22109167IPR016177DNA-binding domain
CDDcd000183.53E-33109169No hitNo description
SMARTSM003808.2E-37110173IPR001471AP2/ERF domain
PROSITE profilePS5103223.538110167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-31110168IPR001471AP2/ERF domain
PRINTSPR003671.7E-11111122IPR001471AP2/ERF domain
PRINTSPR003671.7E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MCGGAIISDF KPVGTRRLTA DYLLPDVKKG RKHEVVKIED DFEADFEEFE DESEEEEEID  60
VKPFVFGSKV PFSRGSCLEA MGGKGLSTNL ASVDFGGFVS KSAKRKRNSQ YRGIRQRPWG  120
KWTAEIRDPY KGVRVWLGTF GTAEEAARAY DVEARRIRGK KAKVNFPETP ASAQKRHHKP  180
TLQAPKPAMS EKHKFNQTFK CLSDLDCDIY STMEHKGVEE ISKPEFVNSM DCLDFGWEHK  240
TRTSEIASLL APTMTGGNES GFLEHGNPKK KLKNNSREAM PAVEDSAMKF FEDLSDFHTF  300
MEFLQIPCAE GSSDASIDSL FSSEVAQEGL STLDLWSFDD LPMEGNVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-21110167260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937273.11e-178ethylene-responsive transcription factor 1
RefseqXP_019710118.11e-178ethylene-responsive transcription factor 1
TrEMBLA0A2H3XFR21e-175A0A2H3XFR2_PHODC; ethylene-responsive transcription factor 1-like
STRINGXP_008783109.11e-175(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-42related to AP2 12