PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s929081g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | FAR1 | ||||||||
Protein Properties | Length: 253aa MW: 27862.8 Da PI: 10.8171 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.4 | 4e-07 | 28 | 73 | 2 | 47 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY eY+++ GF+ r+ ++++s +g ++++f C + + +k + PDK_30s929081g004 28 FYYEYGEKSGFKARTGSNRRSAGSGALIMQRFLCWRGNYLMYRKFT 73 9*********************************998776666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-4 | 28 | 81 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MPVKTEDGAG LVPVMGMEFE SVEAAKAFYY EYGEKSGFKA RTGSNRRSAG SGALIMQRFL 60 CWRGNYLMYR KFTGTNAGKQ KRGPYKKRAR RLATAAAKKD GDVGEIIQVE SSTEKVGVAG 120 GDRGVEVHSG PPVKEQAVAE KDVGQKPPIP SIGMPAQAVA AAAGKDGEKQ KDDGKAIPVA 180 NTAESRLLRE LGVRVSRYTQ EERRDIIIRY MMKRTNRQGV QRPVKVSSRR ALAERRQRGI 240 GGRFLRRDES QET |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026659802.1 | 1e-173 | uncharacterized protein LOC113462603 isoform X2 | ||||
TrEMBL | A0A3Q0I2M5 | 1e-171 | A0A3Q0I2M5_PHODC; uncharacterized protein LOC113462603 isoform X2 | ||||
STRING | XP_008787331.1 | 1e-166 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14833 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 9e-10 | FAR1 family protein |