PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s929081g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 873aa MW: 99675 Da PI: 8.4031

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s929081g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.1	9.4e-26	53	139	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA +vGFs+rk ks+rn + +r +vCs+eg+r ++ ++ +e++tr+etrtgC a++ +k + +gk+++++++ +HnH+la PDK_30s929081g003 53 EFYVKYAGTVGFSIRKGWWDKSSRNV-TRSRVYVCSREGFRPKTVTN--DEKKTRPETRTGCPARMAIKITPSGKYCISEFVADHNHQLA 139 6*******************7776.999********99988..99***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-23	53	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-27	237	330	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.73	505	552	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MATVTVRLLL KMISSRQDEK TEADPAVPAE DATNIGGEPN VGMVFANEDK AYEFYVKYAG 60 TVGFSIRKGW WDKSSRNVTR SRVYVCSREG FRPKTVTNDE KKTRPETRTG CPARMAIKIT 120 PSGKYCISEF VADHNHQLAA PLDIQMLRSQ RLLAKVQPGG RRSTSLIPAD YRNYLRSKRM 180 KDMKNGDAGA LLEYLQKMKS KNPSFFYAIQ VDEEDQLTNI FWADAQSMMD YHYFGDVVCF 240 DTAYRTNDYD RPFALFFGVN HHKQITIFGA ALLYDETVES FKWLFETFKT AMCRKQPRTV 300 LTDRSAAVYD AIAAIWTGTM HRLCLWQIHQ DAMKNLSHVF EGSETFALDF SRCLYDCEDK 360 EEFLSAWETM LEKYDLKDNE WLRKLYEERE KWALVHAREI FCADIANTIR NENLNSVLKE 420 YLKLETDLLS FFKQYDRLLE ERRFAEQQAD YHANQRTSRI PPLRLLWQAA NVYTPAVFEM 480 FRLEFELIMN CMVYSCGEVG TISQYVVTVK GKTKEHFVRF DSADGSAICS CKKFEFAGVQ 540 CFHVLKILDL RNTKELPLQY VLKRWTKDAK VGSARDNHSF ALDGDPKSSL PKRYSSLCGI 600 LYKLAARAAE NAEAYSFMES QSDQLLEQVE HILQARLLEK SSPSTVSKGQ PHNLVHNESN 660 NGESPRAGGK KKKNGDARRK NQNGFESNKR QKGRQGLSGD AEITTRSDEP PAPSDEMPAQ 720 PRNPPNQFFA PSQFMQGSYV SGHQFGLSSV QGFHNMTQFS QVQESPATVL QQQPFHGNTE 780 LGQFSVLKPA QLRTCTPCNL LGAIRNWATR AVIRAIIQYQ YGTFYEVALE HMRHGKGCQM 840 QQPISSPGVF NSFGATRFYS TAQESTNSAS WLM

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MATVTVRLLL KMISSRQDEK TEADPAVPAE DATNIGGEPN VGMVFANEDK AYEFYVKYAG  60
TVGFSIRKGW WDKSSRNVTR SRVYVCSREG FRPKTVTNDE KKTRPETRTG CPARMAIKIT  120
PSGKYCISEF VADHNHQLAA PLDIQMLRSQ RLLAKVQPGG RRSTSLIPAD YRNYLRSKRM  180
KDMKNGDAGA LLEYLQKMKS KNPSFFYAIQ VDEEDQLTNI FWADAQSMMD YHYFGDVVCF  240
DTAYRTNDYD RPFALFFGVN HHKQITIFGA ALLYDETVES FKWLFETFKT AMCRKQPRTV  300
LTDRSAAVYD AIAAIWTGTM HRLCLWQIHQ DAMKNLSHVF EGSETFALDF SRCLYDCEDK  360
EEFLSAWETM LEKYDLKDNE WLRKLYEERE KWALVHAREI FCADIANTIR NENLNSVLKE  420
YLKLETDLLS FFKQYDRLLE ERRFAEQQAD YHANQRTSRI PPLRLLWQAA NVYTPAVFEM  480
FRLEFELIMN CMVYSCGEVG TISQYVVTVK GKTKEHFVRF DSADGSAICS CKKFEFAGVQ  540
CFHVLKILDL RNTKELPLQY VLKRWTKDAK VGSARDNHSF ALDGDPKSSL PKRYSSLCGI  600
LYKLAARAAE NAEAYSFMES QSDQLLEQVE HILQARLLEK SSPSTVSKGQ PHNLVHNESN  660
NGESPRAGGK KKKNGDARRK NQNGFESNKR QKGRQGLSGD AEITTRSDEP PAPSDEMPAQ  720
PRNPPNQFFA PSQFMQGSYV SGHQFGLSSV QGFHNMTQFS QVQESPATVL QQQPFHGNTE  780
LGQFSVLKPA QLRTCTPCNL LGAIRNWATR AVIRAIIQYQ YGTFYEVALE HMRHGKGCQM  840
QQPISSPGVF NSFGATRFYS TAQESTNSAS WLM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010923743.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A3Q0I295	0.0	A0A3Q0I295_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008787331.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-123	FAR1-related sequence 5