PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s928781g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 351aa    MW: 38605.7 Da    PI: 6.4308
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s928781g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.6e-191461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lvd+++++G g+W+  ++  g++R++k+c++rw +yl
  PDK_30s928781g002 14 KGPWTPEEDKKLVDYIQKHGHGSWRNLPKNAGLNRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding521.6e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++++E+ l ++++  lG++ W+tIa  ++ gRt++++k++w+++l
  PDK_30s928781g002  67 RGKFSEDEERLVIHLHSVLGNK-WSTIATQLP-GRTDNEIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.29961IPR017930Myb domain
SuperFamilySSF466899.17E-3211108IPR009057Homeodomain-like
SMARTSM007175.1E-161363IPR001005SANT/Myb domain
PfamPF002498.3E-181461IPR001005SANT/Myb domain
CDDcd001673.70E-131661No hitNo description
PROSITE profilePS5129427.61462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-2665116IPR009057Homeodomain-like
SMARTSM007172.1E-1566114IPR001005SANT/Myb domain
PfamPF002496.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.00E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRSPCCDEV GVKKGPWTPE EDKKLVDYIQ KHGHGSWRNL PKNAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEDEERLVIH LHSVLGNKWS TIATQLPGRT DNEIKNYWNT HLRKKLLLMG  120
IDPVTHRPRT DLDLLTSLPS FLAAAKNLGN LTSPLDDVLR LHADAANLAK FQILQSLIQL  180
ISSTSPPYMG LGNLLGAAPL QNFNFSDLLQ MNRQLEGLMN GSLGLPQNQI QMTSGLSGLG  240
IAQVPNNFQA CPESSLPLKE QEMVAQFHGS CSTTEHAMDS NCQSTNPVSL NSCAIPTAHS  300
TPSLVSASPE NASTDQTQDP IHSNASTPLE DWEGLDLGGL ENDLSWKDIL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026659444.10.0transcription factor MYB93-like
SwissprotQ9S9Z29e-86MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A3Q0HY450.0A0A3Q0HY45_PHODC; transcription factor MYB93-like
STRINGXP_008796312.11e-166(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-88myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]