PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s928761g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 601aa    MW: 67488.4 Da    PI: 5.0184
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s928761g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS181.36.7e-56272481133343
               GRAS 133 asRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleser 224
                        a+++++  + +  g g+++ ++++++ee g+rL+++A++++vpfe++  +a+++e++++e+L+++++E+l+Vn+ ++  +l+de+v ++s+r
  PDK_30s928761g001 272 ANKNSQNGHAKGSGGGKARGKKQKRIEESGRRLSDYAKSFNVPFEYQG-IASKWENIRVEDLKIDRDEVLIVNCFYRFRNLVDETVVVDSPR 362
                        56666666777777777777799*************************.7****************************************** PP

               GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                        ++v+++++++sP+v+++   + +++++ F++rf eal +ysalfd+le+++pre+e+r  +Er l+gre+ nv+aceg+er+er et+++W+
  PDK_30s928761g001 363 NKVINTIRKMSPDVFIHGVVNGSYSAPFFVTRFREALFHYSALFDMLETNVPRENEQRLLIERDLFGREALNVIACEGSERVERPETYKQWQ 454
                        ******************************************************************************************** PP

               GRAS 317 erleeaGFkpvplsekaakqaklllrk 343
                         r  +aGF ++pl+ +++k+ak  +++
  PDK_30s928761g001 455 VRNLRAGFMQLPLNPDIMKKAKDKVKT 481
                        *********************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.9972492IPR005202Transcription factor GRAS
PfamPF035142.3E-53272481IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
PEDCEIFSDV ALNYISRMLM EEDIDEKVNS YQEESALQAA EKPFYEILGQ TYPPSPDQPP  60
LDSQRSIESP DESSNSNYGN SSSGGNSSRV VDNGWAPDFH GYQQSQSFTV SLDHTSQSPL  120
SSSSSVGNAV EAVEEALISG SRLPDLLIES LPAWQFRRGV EEARKFLPSN ARLKIDREAD  180
GVSLPQKPRN AGRLVDVKAE EEETEYPVYG SRGRKNLHRE DLDLEEGRSN KQSAVYSEDT  240
IRSEMFDMVL LCQGDKSLKK ISDLREAMQN EANKNSQNGH AKGSGGGKAR GKKQKRIEES  300
GRRLSDYAKS FNVPFEYQGI ASKWENIRVE DLKIDRDEVL IVNCFYRFRN LVDETVVVDS  360
PRNKVINTIR KMSPDVFIHG VVNGSYSAPF FVTRFREALF HYSALFDMLE TNVPRENEQR  420
LLIERDLFGR EALNVIACEG SERVERPETY KQWQVRNLRA GFMQLPLNPD IMKKAKDKVK  480
TNVVDLTFLK EGGIQDVVDL TFLKEGGIQA RGLPTCHFSF GEYHPQWCCG LPTKCEQLCR  540
DGSVQSPSSS SDAENGSQMS VTNIYMSNCT AEKILVSTSP NSLMQGSSVQ LPYPSHNLLS  600
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-14291475166342Protein SCARECROW
5b3h_A1e-14291475165341Protein SCARECROW
5b3h_D1e-14291475165341Protein SCARECROW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026663302.10.0scarecrow-like protein 9
TrEMBLA0A3Q0ID770.0A0A3Q0ID77_PHODC; scarecrow-like protein 9
STRINGXP_008799752.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.13e-80GRAS family protein