PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s925071g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 699aa    MW: 73476.9 Da    PI: 5.5445
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s925071g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.3e-08208254146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqk 46 
                        r+ WT+eEd  l+ av++ G g+W+ I +     +Rt  q+  rw +
  PDK_30s925071g008 208 RKLWTKEEDMELIAAVQKCGEGNWANILKGDFkHNRTSSQLSQRWAT 254
                        567************************98433479999999999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7203260IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-14204257IPR009057Homeodomain-like
SuperFamilySSF466893.38E-13206259IPR009057Homeodomain-like
SMARTSM007173.4E-10207258IPR001005SANT/Myb domain
PfamPF002493.0E-7208254IPR001005SANT/Myb domain
CDDcd116603.20E-15211257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDWNALVKRT STGITNAREY QMLWRHLAYR DMLLDKVEDG ADPLILPISL QRISSIGINS  60
DATKIVPMNP SLYVAVNPIL PDTIKDLAPI SMDDDSDLEF ELEASPALSA EASSDATACA  120
KLLISSRSSR GFGPTNRANL GTPLTRNIPD DQRPHDPSDK QKLAHTTSGI NAAAPHSVQK  180
QPLATKRSAE VSHGNELAGS GLPAKKKRKL WTKEEDMELI AAVQKCGEGN WANILKGDFK  240
HNRTSSQLSQ RWATIRRRPA NLLAASGNKS VNSTRSEEER LAAQKAFSLA LDMPMTGSLS  300
AILSGATQSN TPASSATLSA SVSEALPASA PQQASTQATS QQLASNISNK LRTIPPKAVA  360
PVKSSAGPNP LIQAAAFAAG GRIATPSTAA SLFKAAQSKR AFNVRPGGGA HQKSPIMAKS  420
SPATNMVGLQ PPSVRCVQPA VAVPTPAVVS SVSSPTVPWH GTQRLQGSSQ RPTSNPPTGS  480
ATVPNLSAPT MFSESRPPAD SQENAESNSD ISFPLIPAID VDELLAEEVD GADEMELDGS  540
AAESHETNLL CPNVGESDND IVNNAACDMQ KAAAGCKDLS KSQTHENQTL NNKAVSPATG  600
AAENKAMEID AGGDQIPVEE STHLANGESS ERRSMNTASV PNQIVAQEQL ACTEAGADEV  660
KQSRILVERR AVLEDTASGN QSPVDDHAGS IGATQDLSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209KKKRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784210.10.0uncharacterized protein LOC103703208 isoform X1
TrEMBLA0A2H3XI870.0A0A2H3XI87_PHODC; uncharacterized protein LOC103703208 isoform X1
STRINGXP_008784210.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-42MYB_related family protein