PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s922391g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35367.9 Da PI: 8.2629 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++ +G+g +W + ++++g++R++k+c++rw++yl PDK_30s922391g001 14 KGPWSPEEDAKLKSYIEHHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.6 | 1e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PDK_30s922391g001 69 GGFSEEEDRIICSLYVAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.523 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.94E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.152 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.23E-8 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE HHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDRIIC SLYVAIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 QPKNQQQARR VCHKNQETKE SKDGNSLWPT PPVPADQFDQ VDHHVSDGRA SIRKFLTTLG 180 GRFSCNYGAE HETPLASFLG QQHLYRSSMD SIEPSEQVNS FINGCSPSGY HHILQGRSEI 240 PVEFNEMFCG NSVKLEGLDC FFGVGNMVGE SNGTSTSGSM NWNEVSPLIY PPVVTSYQGM 300 QQQYLPDELV HLLGAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008785764.1 | 0.0 | transcription repressor MYB5 | ||||
TrEMBL | A0A2H3XMB3 | 0.0 | A0A2H3XMB3_PHODC; transcription repressor MYB5 | ||||
STRING | XP_008785764.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 4e-76 | myb domain protein 84 |