PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s922211g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRF

Protein Properties

Length: 320aa MW: 34672.7 Da PI: 9.4246

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s922211g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.9	2e-24	227	271	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e PDK_30s922211g002 227 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 271 79****************************************985 PP
2	QLQ	57.7	3.4e-20	157	193	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp Ll i++ PDK_30s922211g002 157 GPFTPSQWMELEHQALIYKYIDANVPIPPSLLISIRR 193 59******************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	9.3E-12	157	193	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.9E-15	158	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.368	158	193	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	227	271	IPR014977	WRC domain
Pfam	PF08879	9.2E-21	228	270	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDIGGVVGME GLVSGASSEF GGPFSSPRVS SDSELKQRGV FCSSGRSGGF EENEWRFSKM 60 ARTEAMLAPS ITRGAAFLHR SNSHSLFPER EQMLSFSSSP SSKPDAIVLA SDETLPYYHH 120 PSSSSSTPSY LRNAGVSGWD SGGSNVNMNG VLSRMRGPFT PSQWMELEHQ ALIYKYIDAN 180 VPIPPSLLIS IRRSLNPSGF SPISSGSFGF SPLGWGSFHM GYSGNVDPEP GRCRRTDGKK 240 WRCSRDAVAD QKYCERHMNR GRHRSRKHVE GHTGYAAKAM PIIPPSQSAS AVSGSRSCSS 300 LTITQQQSNA TDPCPAPLNR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063759	2e-35	BT063759.1 Zea mays full-length cDNA clone ZM_BFc0104G18 mRNA, complete cds.
GenBank	BT064538	2e-35	BT064538.1 Zea mays full-length cDNA clone ZM_BFc0179B15 mRNA, complete cds.
GenBank	BT067085	2e-35	BT067085.1 Zea mays full-length cDNA clone ZM_BFb0185D09 mRNA, complete cds.
GenBank	BT088016	2e-35	BT088016.1 Zea mays full-length cDNA clone ZM_BFb0357C16 mRNA, complete cds.
GenBank	EU969909	2e-35	EU969909.1 Zea mays clone 337118 growth-regulating factor 1 mRNA, complete cds.
GenBank	EU973647	2e-35	EU973647.1 Zea mays clone 403513 growth-regulating factor 1 mRNA, complete cds.
GenBank	KJ726877	2e-35	KJ726877.1 Zea mays clone pUT3418 GRF transcription factor (GRF1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785737.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	1e-63	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2H3XM02	0.0	A0A2H3XM02_PHODC; growth-regulating factor 6-like
STRING	XP_008785737.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	7e-45	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]