PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s920901g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 242aa    MW: 26389.9 Da    PI: 7.7948
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s920901g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.66.6e-181865249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       ri+n+  rq+ fskRr g++ KA+ LS+LC+ ++av++fs+ gk y +
  PDK_30s920901g001 18 RIKNEEVRQICFSKRRSGLFTKASDLSTLCGSDIAVLVFSPGGKPYSF 65
                       8******************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-28968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.955969IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-251087IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-171131IPR002100Transcription factor, MADS-box
CDDcd002653.16E-301476No hitNo description
PfamPF003193.1E-231865IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MPRKKKTTKG KQKIEIRRIK NEEVRQICFS KRRSGLFTKA SDLSTLCGSD IAVLVFSPGG  60
KPYSFGSPDI NPVIDRFLSD FSSSSWSGFC SGKPSNMVEQ LSQRCLELTN QLEAWKAKGA  120
MLEEKLNSPS HVLEYECFEN MDDLDELGQL AEALKQVKLN ADAQVNRLLT NTGASFSTPV  180
IIHNQREGAS SSHAVMANNQ GIGASSSLNM GASASFADFV AEMMAFPPSP PCGDIGFRSG  240
FF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787358.11e-180agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XQV21e-179A0A2H3XQV2_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008787358.11e-180(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5090422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-28AGAMOUS-like 29