PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s918061g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YC | ||||||||
Protein Properties | Length: 174aa MW: 19727.3 Da PI: 6.0057 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175.3 | 6.2e-55 | 46 | 149 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ql++fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+fileltlr w haeenkrrtl+ksdiaaa+trtd+f PDK_30s918061g002 46 QLQMFWADQyreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTLRGWAHAEENKRRTLQKSDIAAAITRTDVF 137 89*****99999******************************************************************************** PP NF-YC 90 dflvdivprdel 101 dflvdivpr+e PDK_30s918061g002 138 DFLVDIVPREEG 149 *********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.68E-32 | 38 | 140 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.5E-37 | 60 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.7E-21 | 68 | 131 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MDQKSQGTPP AIGVATPVPY SAAAATAPYQ AYHHLYHQQQ QQQQQQLQMF WADQYREIEQ 60 TTDFKNHNLP LARIKKIMKA DEDVRMIAAE APVVFARACE MFILELTLRG WAHAEENKRR 120 TLQKSDIAAA ITRTDVFDFL VDIVPREEGK DDAIPRGLAG APADPLAYYY VPQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-58 | 54 | 146 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 124 | RRTLQKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100449 | 1e-116 | FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008802191.1 | 1e-127 | nuclear transcription factor Y subunit C-6-like | ||||
Swissprot | Q9XE33 | 7e-67 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A2H3YQ92 | 1e-126 | A0A2H3YQ92_PHODC; nuclear transcription factor Y subunit C-6-like | ||||
STRING | XP_008802191.1 | 1e-126 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-64 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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